ENSG00000144028


Homo sapiens

Features
Gene ID: ENSG00000144028
  
Biological name :SNRNP200
  
Synonyms : O75643 / small nuclear ribonucleoprotein U5 subunit 200 / SNRNP200
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: q11.2
Gene start: 96274336
Gene end: 96305515
  
Corresponding Affymetrix probe sets: 200058_s_at (Human Genome U133 Plus 2.0 Array)   214982_at (Human Genome U133 Plus 2.0 Array)   217114_at (Human Genome U133 Plus 2.0 Array)   232931_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000317123
Ensembl peptide - ENSP00000387870
NCBI entrez gene - 23020     See in Manteia.
OMIM - 601664
RefSeq - NM_014014
RefSeq - XM_017003603
RefSeq Peptide - NP_054733
swissprot - B4E0P5
swissprot - O75643
Ensembl - ENSG00000144028
  
Related genetic diseases (OMIM): 610359 - Retinitis pigmentosa 33, 610359
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snrnp200ENSDARG00000077536Danio rerio
 Q6P4T2ENSMUSG00000003660Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ASCC3 / Q8N3C0 / activating signal cointegrator 1 complex subunit 3ENSG0000011224940
POLQ / O75417 / DNA polymerase thetaENSG0000005134113
HELQ / Q8TDG4 / helicase, POLQ likeENSG000001633129
POLN / Q7Z5Q5 / DNA polymerase nuENSG000001309974


Protein motifs (from Interpro)
Interpro ID Name
 IPR001650  Helicase, C-terminal
 IPR004179  Sec63 domain
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014756  Immunoglobulin E-set
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR035892  C2 domain superfamily
 IPR036390  Winged helix DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000354 cis assembly of pre-catalytic spliceosome IC
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0001649 osteoblast differentiation HDA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005682 U5 snRNP IDA
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IDA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IDA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008026 ATP-dependent helicase activity IDA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0042802 identical protein binding IPI


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
Show

 HP:0000035 Abnormality of the testis 
Show

 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
Show

 HP:0000405 Hearing loss, conductive 
Show

 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
Show

 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
Show

 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
Show

 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
Show

 HP:0000505 Impaired vision 
Show

 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
Show

 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
Show

 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
Show

 HP:0000543 Pale optic disks 
Show

 HP:0000563 Keratoconus "A cone-shaped deformity of the cornea." [HPO:curators]
Show

 HP:0000602 Ophthalmoplegia 
Show

 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
Show

 HP:0000618 Blindness 
Show

 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
Show

 HP:0000648 Optic atrophy 
Show

 HP:0000662 Night blindness 
Show

 HP:0000842 Hyperinsulinemia 
Show

 HP:0000987 Scarring 
Show

 HP:0001249 Mental retardation 
Show

 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
Show

 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
Show

 HP:0005978 Noninsulin-dependent diabetes mellitus 
Show

 HP:0007675 Progressive night blindness 
Show

 HP:0007703 Abnormal retinal pigmentation 
Show

 HP:0007722 Loss of retinal pigment epithelium 
Show

 HP:0007737 Bony spicule pigmentary retinopathy 
Show

 HP:0007843 Attenuation of retinal blood vessels 
Show

 HP:0008046 Abnormality of the retinal vasculature 
Show

 HP:0008736 Hypoplasia of penis 
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr