ENSDARG00000079818


Danio rerio

Features
Gene ID: ENSDARG00000079818
  
Biological name :helq
  
Synonyms : helicase, POLQ like / helq
  
Possible biological names infered from orthology : Q2VPA6 / Q8TDG4
  
Species: Danio rerio
  
Chr. number: 21
Strand: 1
Band:
Gene start: 19330774
Gene end: 19347524
  
Corresponding Affymetrix probe sets: Dr.16890.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000116330
Ensembl peptide - ENSDARP00000104305
NCBI entrez gene - 562952     See in Manteia.
RefSeq - NM_001282423
RefSeq Peptide - NP_001269352
swissprot - F1R2F8
swissprot - F1Q4P2
ZFIN ID - ZDB-GENE-060503-421
Ensembl - ENSDARG00000079818
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000043261Gallus gallus
 ENSGALG00000011208Gallus gallus
 HELQENSG00000163312Homo sapiens
 HelqENSMUSG00000035266Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
polq / polymerase (DNA directed), theta / O75417* / Q8CGS6* / DNA polymerase theta*ENSDARG0000004462226
snrnp200 / small nuclear ribonucleoprotein 200 (U5) / Q6P4T2* / O75643* / small nuclear ribonucleoprotein U5 subunit 200* / U5 small nuclear ribonucleoprotein 200 kDa helicase *ENSDARG0000007753617
ascc3 / activating signal cointegrator 1 complex subunit 3ENSDARG0000008667816
poln / polymerase (DNA directed) nu / Q7Z5Q5* / DNA polymerase N* / DNA polymerase nu*ENSDARG000001039615


Protein motifs (from Interpro)
Interpro ID Name
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR011991  ArsR-like helix-turn-helix domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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