ENSDARG00000078123


Danio rerio

Features
Gene ID: ENSDARG00000078123
  
Biological name :slitrk3a
  
Synonyms : SLIT and NTRK-like family, member 3a / slitrk3a
  
Possible biological names infered from orthology : Mus musculus SLIT and NTRK-like family, member 3 (Slitrk3), transcript variant 2, mRNA. / O94933 / Q810B9 / SLIT and NTRK like family member 3 / SLITRK3
  
Species: Danio rerio
  
Chr. number: 18
Strand: 1
Band:
Gene start: 1703984
Gene end: 1706599
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000104112
NCBI entrez gene - 100334261     See in Manteia.
swissprot - F1R5M4
ZFIN ID - ZDB-GENE-130226-1
Ensembl - ENSDARG00000078123
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SLITRK3ENSGALG00000042159Gallus gallus
 O94933ENSG00000121871Homo sapiens
 Q810B9ENSMUSG00000048304Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
slitrk3b / SLIT and NTRK-like family, member 3b / O94933* / Q810B9* / SLITRK3* / SLIT and NTRK like family member 3* / Mus musculus SLIT and NTRK-like family, member 3 (Slitrk3), transcript...ENSDARG0000007473973
slitrk5a / SLIT and NTRK-like family, member 5a / O94991* / SLITRK5* / SLIT and NTRK like family member 5*ENSDARG0000010335944
slitrk2 / SLIT and NTRK-like family, member 2 / O96002* / Q810C0* / Q9H156*ENSDARG0000000663642
slitrk5b / SLIT and NTRK-like family, member 5b / Q810B7* / O94991* / SLITRK5* / SLIT and NTRK-like protein 5 * / SLIT and NTRK like family member 5*ENSDARG0000007415341
slitrk4 / SLIT and NTRK-like family, member 4 / Q810B8* / Q8IW52*ENSDARG0000007978139
slitrk6 / SLIT and NTRK-like family, member 6 / Q9H5Y7*ENSDARG0000009876934
CR847537.1 / ELFN2* / Q5R3F8* / extracellular leucine rich repeat and fibronectin type III domain containing 2*ENSDARG0000011087413
elfn1b / extracellular leucine-rich repeat and fibronectin type III domain containing 1b / ELFN1* / P0C7U0* / Q8C8T7* / Protein ELFN1 * / extracellular leucine rich repeat and fibronectin t...ENSDARG0000007437212
elfn2a / extracellular leucine-rich repeat and fibronectin type III domain containing 2a / ELFN2* / Q5R3F8* / Q68FM6* / extracellular leucine rich repeat and fibronectin type III domain con...ENSDARG000000776098
si:ch73-185c24.2 / LRRC19* / Q8BZT5* / Q9H756* / leucine rich repeat containing 19* / Leucine-rich repeat-containing protein 19 *ENSDARG000000969085


Protein motifs (from Interpro)
Interpro ID Name
 IPR000483  Cysteine-rich flanking region, C-terminal
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007409 axonogenesis IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
Receptor-type tyrosine-protein phosphatases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr