ENSDARG00000079850


Danio rerio

Features
Gene ID: ENSDARG00000079850
  
Biological name :dchs1b
  
Synonyms : dachsous cadherin-related 1b / dchs1b
  
Possible biological names infered from orthology : dachsous cadherin-related 1 / DCHS1 / E9PVD3 / Protocadherin-16 / Q96JQ0
  
Species: Danio rerio
  
Chr. number: 10
Strand: -1
Band:
Gene start: 26268790
Gene end: 26430168
  
Corresponding Affymetrix probe sets: Dr.14830.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000109139
Ensembl peptide - ENSDARP00000113902
Ensembl peptide - ENSDARP00000099302
NCBI entrez gene - 553300     See in Manteia.
RefSeq - XM_021472280
swissprot - E9QEN9
swissprot - F1QGX1
swissprot - F1QXA3
ZFIN ID - ZDB-GENE-050208-41
Ensembl - ENSDARG00000079850
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 DCHS1ENSGALG00000017334Gallus gallus
 DCHS1ENSG00000166341Homo sapiens
 Dchs1ENSMUSG00000036862Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
dchs1a / dachsous cadherin-related 1a / DCHS1* / Q96JQ0* / E9PVD3* / Protocadherin-16 * / dachsous cadherin-related 1*ENSDARG0000007002572
fat1a / FAT atypical cadherin 1a / FAT1* / Q14517* / FAT atypical cadherin 1*ENSDARG0000001759128
fat3a / FAT atypical cadherin 3a / FAT3* / Q8TDW7* / FAT atypical cadherin 3*ENSDARG0000003384027
FAT3 (1 of many) / si:ch211-214k5.6 / FAT3* / Q8TDW7* / FAT atypical cadherin 3*ENSDARG0000008770926
fat1b / FAT atypical cadherin 1b / FAT1* / Q14517* / FAT atypical cadherin 1*ENSDARG0000001906326
FAT4 / FAT atypical cadherin 4 / Q2PZL6* / Q6V0I7* / Protocadherin Fat 4 *ENSDARG0000010528526
fat2 / FAT atypical cadherin 2 / Q5F226* / Q9NYQ8* / Protocadherin Fat 2 *ENSDARG0000001892325
cdh23 / cadherin-related 23 / Q9H251*ENSDARG0000000756120
si:ch211-186j3.6ENSDARG0000007808817
si:dkey-22o22.2ENSDARG0000010244516
celsr1b / cadherin EGF LAG seven-pass G-type receptor 1b / CELSR1* / O35161* / Q9NYQ6* / cadherin EGF LAG seven-pass G-type receptor 1*ENSDARG0000005825915
celsr2 / cadherin, EGF LAG seven-pass G-type receptor 2 / Q9HCU4* / cadherin EGF LAG seven-pass G-type receptor 2 isoform 2 *ENSDARG0000001972615
celsr1a / cadherin EGF LAG seven-pass G-type receptor 1a / CELSR1* / O35161* / Q9NYQ6* / cadherin EGF LAG seven-pass G-type receptor 1*ENSDARG0000006918515
celsr3 / cadherin, EGF LAG seven-pass G-type receptor 3 / Q91ZI0* / Q9NYQ7*ENSDARG0000005582512
si:dkey-1m11.6ENSDARG0000009786910
cdh23 / cadherin-related 23 / Q99PF4* / Q9H251* / Cadherin-23 *ENSDARG000000944544


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR027397  Catenin binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000226 microtubule cytoskeleton organization IMP
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007343 egg activation IMP
 biological_processGO:0036302 atrioventricular canal development IMP
 biological_processGO:0060471 cortical granule exocytosis IMP
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000084 yolk yolk deformed , abnormal
yolk displaced to blastodisc , abnormal
yolk displaced to blastoderm , abnormal
yolk amorphous , abnormal
yolk cytoplasm present , abnormal
Show

 ZFA:0000088 YSL YSL nucleus spatial pattern , abnormal
Show

 ZFA:0000093 blastomere blastomere size , abnormal
blastomere increased variability of size , abnormal
Show

 ZFA:0000114 heart heart blood circulation disrupted , abnormal
Show

 ZFA:0000135 notochord notochord anterior-posterior axis decreased length , abnormal
notochord medial-lateral axis increased width , abnormal
Show

 ZFA:0001175 blastodisc blastodisc decreased size , abnormal
Show

 ZFA:0001567 oocyte stage I oocyte stage I microtubule decreased amount , abnormal
Show

 ZFA:0005772 fertilized egg fertilized egg microtubule irregular spatial pattern , abnormal
fertilized egg microtubule disoriented , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr