Manteia

ENSDARG00000094454

Danio rerio

Features

Gene ID:	ENSDARG00000094454

Biological name :	cdh23

Synonyms :	cadherin-related 23 / cdh23

Possible biological names infered from orthology :	Cadherin-23 / Q99PF4 / Q9H251

Species:	Danio rerio

Chr. number:	13
Strand:	1
Band:
Gene start:	42762226
Gene end:	43011856

Corresponding Affymetrix probe sets:

Cross references:	Ensembl peptide - ENSDARP00000119218 Ensembl peptide - ENSDARP00000151992 swissprot - F1R7G8 ZFIN ID - ZDB-GENE-040513-7 Ensembl - ENSDARG00000094454

See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Ortholog name	ID	Species
	ENSGALG00000004653	Gallus gallus
	ENSGALG00000036824	Gallus gallus
CDH23	ENSG00000107736	Homo sapiens
Cdh23	ENSMUSG00000012819	Mus musculus

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
dchs1b / dachsous cadherin-related 1b / DCHS1* / Q96JQ0* / E9PVD3* / Protocadherin-16 * / dachsous cadherin-related 1*	ENSDARG00000079850	28
dchs1a / dachsous cadherin-related 1a / DCHS1* / Q96JQ0* / E9PVD3* / Protocadherin-16 * / dachsous cadherin-related 1*	ENSDARG00000070025	28
fat3a / FAT atypical cadherin 3a / FAT3* / Q8TDW7* / FAT atypical cadherin 3*	ENSDARG00000033840	27
fat2 / FAT atypical cadherin 2 / Q5F226* / Q9NYQ8* / Protocadherin Fat 2 *	ENSDARG00000018923	27
fat1a / FAT atypical cadherin 1a / FAT1* / Q14517* / FAT atypical cadherin 1*	ENSDARG00000017591	26
fat1b / FAT atypical cadherin 1b / FAT1* / Q14517* / FAT atypical cadherin 1*	ENSDARG00000019063	26
FAT3 (1 of many) / si:ch211-214k5.6 / FAT3* / Q8TDW7* / FAT atypical cadherin 3*	ENSDARG00000087709	25
FAT4 / FAT atypical cadherin 4 / Q2PZL6* / Q6V0I7* / Protocadherin Fat 4 *	ENSDARG00000105285	24
celsr2 / cadherin, EGF LAG seven-pass G-type receptor 2 / Q9HCU4* / cadherin EGF LAG seven-pass G-type receptor 2 isoform 2 *	ENSDARG00000019726	15
celsr1b / cadherin EGF LAG seven-pass G-type receptor 1b / CELSR1* / O35161* / Q9NYQ6* / cadherin EGF LAG seven-pass G-type receptor 1*	ENSDARG00000058259	14
celsr3 / cadherin, EGF LAG seven-pass G-type receptor 3 / Q91ZI0* / Q9NYQ7*	ENSDARG00000055825	14
si:ch211-186j3.6	ENSDARG00000078088	13
celsr1a / cadherin EGF LAG seven-pass G-type receptor 1a / CELSR1* / O35161* / Q9NYQ6* / cadherin EGF LAG seven-pass G-type receptor 1*	ENSDARG00000069185	13
si:dkey-22o22.2	ENSDARG00000102445	6
si:dkey-1m11.6	ENSDARG00000097869	2
cdh23 / cadherin-related 23 / Q9H251*	ENSDARG00000007561	1

Protein motifs (from Interpro)

Interpro ID	Name
IPR002126	Cadherin
IPR015919	Cadherin-like
IPR020894	Cadherin conserved site

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0006897	endocytosis	IMP
biological_process	GO:0007155	cell adhesion	IEA
biological_process	GO:0007156	homophilic cell adhesion via plasma membrane adhesion molecules	IEA
biological_process	GO:0007605	sensory perception of sound	IMP
biological_process	GO:0007626	locomotory behavior	IEA
biological_process	GO:0030030	cell projection organization	IMP
biological_process	GO:0035315	hair cell differentiation	IMP
biological_process	GO:0035678	neuromast hair cell morphogenesis	IMP
biological_process	GO:0042891	antibiotic transport	IEA
biological_process	GO:0050957	equilibrioception	IMP
biological_process	GO:0050974	detection of mechanical stimulus involved in sensory perception	IMP
biological_process	GO:0060117	auditory receptor cell development	IMP
biological_process	GO:0060122	inner ear receptor cell stereocilium organization	IEA
biological_process	GO:0061512	protein localization to cilium	IMP
cellular_component	GO:0005886	plasma membrane	IEA
cellular_component	GO:0005929	cilium	IDA
cellular_component	GO:0016020	membrane	IEA
cellular_component	GO:0016021	integral component of membrane	ISS
cellular_component	GO:0032420	stereocilium	IEA
molecular_function	GO:0005509	calcium ion binding	IEA
molecular_function	GO:0042895	antibiotic transmembrane transporter activity	IMP

Pathways (from Reactome)

Pathway description

No match

Phenotype (from MGI, Zfin or HPO)

Phenotype

Definition

Genetic BG

No match

Interacting proteins (from Reactome)

Interactor ID

Name

Interaction type

No match

0 s.

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		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr