ENSG00000107736


Homo sapiens

Features
Gene ID: ENSG00000107736
  
Biological name :CDH23
  
Synonyms : cadherin related 23 / CDH23 / Q9H251
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 10
Strand: 1
Band: q22.1
Gene start: 71396934
Gene end: 71815947
  
Corresponding Affymetrix probe sets: 1552436_a_at (Human Genome U133 Plus 2.0 Array)   224527_at (Human Genome U133 Plus 2.0 Array)   232845_at (Human Genome U133 Plus 2.0 Array)   232846_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000480146
Ensembl peptide - ENSP00000478374
Ensembl peptide - ENSP00000482036
Ensembl peptide - ENSP00000495691
Ensembl peptide - ENSP00000495222
Ensembl peptide - ENSP00000495176
Ensembl peptide - ENSP00000495098
Ensembl peptide - ENSP00000483211
Ensembl peptide - ENSP00000224721
Ensembl peptide - ENSP00000299366
Ensembl peptide - ENSP00000381768
Ensembl peptide - ENSP00000381789
Ensembl peptide - ENSP00000381822
Ensembl peptide - ENSP00000388894
Ensembl peptide - ENSP00000473454
Ensembl peptide - ENSP00000473539
NCBI entrez gene - 64072     See in Manteia.
OMIM - 605516
RefSeq - XM_017016508
RefSeq - XM_011540042
RefSeq - XM_011540043
RefSeq - XM_011540044
RefSeq - XM_011540045
RefSeq - XM_011540046
RefSeq - XM_011540047
RefSeq - XM_011540048
RefSeq - XM_011540049
RefSeq - XM_011540051
RefSeq - XM_017016499
RefSeq - XM_017016500
RefSeq - XM_017016501
RefSeq - XM_017016502
RefSeq - XM_017016504
RefSeq - XM_017016505
RefSeq - XM_017016506
RefSeq - XM_017016507
RefSeq - NM_001171930
RefSeq - NM_001171931
RefSeq - NM_001171932
RefSeq - NM_001171933
RefSeq - NM_001171934
RefSeq - NM_022124
RefSeq - NM_052836
RefSeq - XM_006717940
RefSeq - XM_006717942
RefSeq - XM_011540039
RefSeq Peptide - NP_001165404
RefSeq Peptide - NP_001165405
RefSeq Peptide - NP_071407
RefSeq Peptide - NP_443068
RefSeq Peptide - NP_001165401
RefSeq Peptide - NP_001165402
RefSeq Peptide - NP_001165403
swissprot - A0A087WWD9
swissprot - B1AVV0
swissprot - Q8N5B3
swissprot - Q9H251
swissprot - A0A0A0MS94
swissprot - A0A0A0MQS6
swissprot - A0A087X097
swissprot - A0A087WYR8
swissprot - G8JLI8
swissprot - R4GN92
Ensembl - ENSG00000107736
  
Related genetic diseases (OMIM): 601067 - Usher syndrome, type 1D, 601067
  601386 - Deafness, autosomal recessive 12, 601386
  617540 - {Pituitary adenoma 5, multiple types}, 617540
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cdh23ENSDARG00000007561Danio rerio
 cdh23ENSDARG00000094454Danio rerio
 ENSGALG00000004653Gallus gallus
 ENSGALG00000036824Gallus gallus
 Cdh23ENSMUSG00000012819Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
FAT4 / Q6V0I7 / FAT atypical cadherin 4ENSG0000019615930
FAT3 / Q8TDW7 / FAT atypical cadherin 3ENSG0000016532329
FAT2 / Q9NYQ8 / FAT atypical cadherin 2ENSG0000008657028
FAT1 / Q14517 / FAT atypical cadherin 1ENSG0000008385728
DCHS1 / Q96JQ0 / dachsous cadherin-related 1ENSG0000016634125
CELSR1 / Q9NYQ6 / cadherin EGF LAG seven-pass G-type receptor 1ENSG0000007527521
CELSR2 / Q9HCU4 / cadherin EGF LAG seven-pass G-type receptor 2ENSG0000014312621
CELSR3 / Q9NYQ7 / cadherin EGF LAG seven-pass G-type receptor 3ENSG0000000830020


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR033030  Cadherin-23


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006816 calcium ion transport IMP
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0007605 sensory perception of sound IEA
 biological_processGO:0007626 locomotory behavior IEA
 biological_processGO:0016339 calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules NAS
 biological_processGO:0045494 photoreceptor cell maintenance IMP
 biological_processGO:0050896 response to stimulus IEA
 biological_processGO:0050953 sensory perception of light stimulus IMP
 biological_processGO:0050957 equilibrioception IMP
 biological_processGO:0051480 regulation of cytosolic calcium ion concentration IMP
 biological_processGO:0060122 inner ear receptor cell stereocilium organization IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0032420 stereocilium IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000026 Hypogonadism, male "Lack of function of the males gonads (i.e., testes)." [HPO:curators]
Show

 HP:0000044 Hypogonadotrophic hypogonadism "Hypogonadotropic hypogonadism is characterized by reduced function of the gonads (testes in males or ovaries in females) and results from the absence of the gonadal stimulating pituitary hormones: follicle stimulating hormone (FSH) and luteinizing hormone (LH)." [HPO:curators]
Show

 HP:0000132 Menorrhagia 
Show

 HP:0000134 Hypogonadism, female "Lack of function of the female gonads (i.e. ovaries)." [HPO:curators]
Show

 HP:0000140 Menstrual abnormalities 
Show

 HP:0000141 Amenorrhea 
Show

 HP:0000311 Round face "An unusually round appearance of the face." [HPO:curators]
Show

 HP:0000365 Hearing loss 
Show

 HP:0000375 Abnormality of cochlea "An abnormality of the cochlea, which is an inner ear structure comprised of a snail-shell like structure divided into three fluid-filled parts. Two are canals for the transmission of pressure and in the third is the organ of Corti, which detects pressure impulses and responds with electrical impulses which travel along the auditory nerve to the brain." [HPO:curators]
Show

 HP:0000399 Deafness, sensorineural, prelingual, profound 
Show

 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
Show

 HP:0000478 Abnormality of the eyes "Any abnormality of the `eyes` (FMA:54448), including location, spacing, and intraocular abnormalities." [HPO:curators]
Show

 HP:0000505 Impaired vision 
Show

 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
Show

 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
Show

 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
Show

 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
Show

 HP:0000529 Progressive visual loss 
Show

 HP:0000572 Visual loss 
Show

 HP:0000575 Scotoma "Scotoma refers to an area or island of loss or impairment of visual acuity surrounded by a field of normal or relatively well-preserved vision." [HPO:curators]
Show

 HP:0000618 Blindness 
Show

 HP:0000651 Diplopia "Diplopia is a condition in which a single object is perceived as two images, it is also known as double vision." [HPO:curators]
Show

 HP:0000662 Night blindness 
Show

 HP:0000682 Abnormality of dental enamel "An abnormality of the dental enamel, which is the external layer of the teeth, being a highly mineralized substance consisting primarily of hydroxylapatite." [HPO:curators]
Show

 HP:0000709 Psychosis "A condition characterized by changes of personality and thought patterns often accompanied by hallucinations and delusional beliefs." [HPO:curators]
Show

 HP:0000716 Depression "A condition characterized by pervasive dysphoric mood, loss of interests, and inability to experience pleasure." [HPO:curators]
Show

 HP:0000738 Hallucinations 
Show

 HP:0000739 Anxiety 
Show

 HP:0000771 Gynecomastia 
Show

 HP:0000787 Kidney stones 
Show

 HP:0000789 Infertility 
Show

 HP:0000802 Impotence 
Show

 HP:0000819 Diabetes mellitus 
Show

 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
Show

 HP:0000823 Delayed puberty 
Show

 HP:0000837 Elevated gonadotropins 
Show

 HP:0000845 Acromegaly "Acromegaly is a condition resulting from overproduction of growth hormone by the pituitary gland in persons with closed epiphyses, and consists chiefly in the enlargement of the distal parts of the body. The circumference of the skull increases, the nose becomes broad, the tongue becomes enlarged, the facial features become coarsened, the mandible grows excessively, and the teeth become separated. The fingers and toes grow chiefly in thickness." [HPO:curators]
Show

 HP:0000853 Goiter "An enlargement of the thyroid gland." [HPO:curators]
Show

 HP:0000868 Decreased fertility in females 
Show

 HP:0000870 Hyperprolactinemia "The presence of abnormally increased levels of prolactin in the blood. Prolactin is a peptide hormone produced by the anterior pituitary gland that plays a role in breast development and lactation during pregnancy." [HPO:curators]
Show

 HP:0000938 Osteopenia "Osteopenia refers to a reduction in bone mineral density (BMD) below normal peak BMD but not low enough to be classified as osteoporosis. According to the WHO, osteopenia is characterized by a value of BMD more than 1 standard deviation below the young adult mean, but less than 2 standard deviations below this value." [HPO:curators]
Show

 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
Show

 HP:0000963 Thin skin 
Show

 HP:0000975 Hyperhidrosis "An abnormally increased perspiration." [HPO:probinson]
Show

 HP:0000978 Ecchymoses 
Show

 HP:0000980 Pallor 
Show

 HP:0001061 Acne 
Show

 HP:0001117 Sudden central visual loss 
Show

 HP:0001249 Mental retardation 
Show

 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
Show

 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
Show

 HP:0001254 Lethargy 
Show

 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
Show

 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
Show

 HP:0001508 Failure to thrive 
Show

 HP:0001581 Recurrent skin infections "Infections of the skin that happen multiple times." [HPO:curators]
Show

 HP:0001635 Congestive heart failure "The presence of an abnormality of cardiac function that is responsible for the failure of the heart to pump blood at a rate that is commensurate with the needs of the tissues or a state in which abnormally elevated filling pressures are required for the heart to do so. Heart failure is frequently related to a defect in myocardial contraction." [HPO:curators]
Show

 HP:0001638 Cardiomyopathy 
Show

 HP:0001698 Pericardial effusion 
Show

 HP:0001751 Vestibular dysfunction 
Show

 HP:0001756 Vestibular hypofunction 
Show

 HP:0001824 Weight loss 
Show

 HP:0001956 Truncal obesity "Obesity located preferentially in the trunk of the body as opposed to the extremities." [HPO:curators]
Show

 HP:0001962 Palpitations 
Show

 HP:0002013 Vomiting 
Show

 HP:0002027 Abdominal pain 
Show

 HP:0002120 Cerebral cortical atrophy 
Show

 HP:0002230 Generalized hirsutism "Abnormally increased hair growth over much of the entire body." [HPO:curators]
Show

 HP:0002315 Headache "Cephalgia, or pain in the head originating from the cerebral vault." [HPO:curators]
Show

 HP:0002321 Vertigo "An abnormal sensation of spinning while the body is actually stationary." [HPO:curators]
Show

 HP:0002360 Sleep disturbances "An abnormality of sleep including such phenomena as 1) insomnia/hypersomnia, 2) non-restorative sleep, 3) sleep schedule disorder, 4) excessive daytime somnolence, 5) sleep apnea, and 6) restlessness." [HPO:curators]
Show

 HP:0002615 Hypotension 
Show

 HP:0002721 Immunodeficiency 
Show

 HP:0002757 Recurrent fractures "The repeated occurence of bone fractures (implying an abnormally increased tendency for fracture)." [HPO:curators]
Show

 HP:0002893 Pituitary adenoma 
Show

 HP:0002900 Hypokalemia 
Show

 HP:0002920 Decreased serum ACTH 
Show

 HP:0002925 Increased serum thyroid-stimulating hormone (TSH) 
Show

 HP:0003198 Myopathy 
Show

 HP:0003388 Easy fatigability 
Show

 HP:0004308 Ventricular arrhythmia 
Show

 HP:0004936 Venous thrombosis 
Show

 HP:0005115 Supraventricular arrhythmia 
Show

 HP:0006897 Cranial nerve VI palsy 
Show

 HP:0007011 Fourth cranial nerve palsy 
Show

 HP:0007302 Bipolar affective disorder 
Show

 HP:0007360 Aplasia/Hypoplasia of the cerebellum 
Show

 HP:0007440 Generalized hyperpigmentation 
Show

 HP:0007730 Reduced iris pigmentation 
Show

 HP:0007942 Internal ophthalmoplegia 
Show

 HP:0008153 Periodic hypokalemic paresis 
Show

 HP:0008209 Premature ovarian failure 
Show

 HP:0008221 Enlarged adrenal glands 
Show

 HP:0008240 Secondary growth hormone deficiency 
Show

 HP:0008245 Tsh deficient hypothyroidism 
Show

 HP:0008247 Euthyroid hyperthyroxinemia 
Show

 HP:0008499 High-grade hypermetropia 
Show

 HP:0009125 Lipodystrophy "Degenerative changes of the fat tissue." [HPO:curators]
Show

 HP:0010885 Aseptic necrosis "A disease where there is cellular death (necrosis) of bone components due to interruption of the blood supply." [HPO:sdoelken]
Show

 HP:0011357 Abnormality of hair density "An abnormality of the density of hair growth." [DDD:cmoss]
Show

 HP:0011735 Adrenocorticotropin (ACTH) deficient adrenal insufficiency "Adrenal insufficiency secondary to a defect in ACTH production." [DDD:spark]
Show

 HP:0011748 Adrenocorticotropic hormone deficiency "A reduced ability to secrete adrenocorticotropic hormone (ACTH), a hormone that stimulates the adrenal cortex to secrete of glucocorticoids such as cortisol." [DDD:spark]
Show

 HP:0011782 Thyroid crisis 
Show

 HP:0012041 Decreased fertility in males 
Show

 HP:0012157 Subcortical cerebral atrophy "Atrophy of the cerebral subcortical white and gray matter, termed subcortical atrophy, reflects loss of nerve cells in the basal ganglia or fibers in the deep white matter." [HPO:probinson, pmid:20813998]
Show

 HP:0012203 Onychomycosis "A fungal infection of the toenails or fingernails that tends to cause the nails to thicken, discolor, disfigure, and split." [HPO:probinson]
Show

 HP:0012246 Oculomotor nerve palsy "Reduced ability to control the movement of the eye associated with damage to the third cranial nerve (the oculomotor nerve)." [HPO:probinson]
Show

 HP:0012377 Hemianopsia "Partial or complete loss of vision in one half of the visual field of one or both eyes." [HPO:probinson]
Show

 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
Show

 HP:0012505 Enlarged pituitary gland "An abnormally increased size of the `pituitary gland` (FMA:13889)." [ORCID:0000-0001-5208-3432]
Show

 HP:0030016 Dyspareunia "Recurrent or persistent genital pain associated with sexual intercourse." []
Show

 HP:0030018 Decreased female libido "Dminished sexual desire in female." []
Show

 HP:0030521 Bitemporal hemianopia 
Show

 HP:0030588 Abnormal visual field test 
Show

 HP:0100585 Teleangiectasia of the skin 
Show

 HP:0100608 Metrorrhagia 
Show

 HP:0100753 Schizophrenia "A mental disorder characterized by a disintegration of thought processes and of emotional responsiveness. It most commonly manifests as auditory hallucinations, paranoid or bizarre delusions, or disorganized speech and thinking, and it is accompanied by significant social or occupational dysfunction. The onset of symptoms typically occurs in young adulthood, with a global lifetime prevalence of about 0.3-0.7%." [HPO:sdoelken]
Show

 HP:0100829 Galactorrhoea "Spontaneous flow of milk from the breast, unassociated with childbirth or nursing." [HPO:sdoelken]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr