ENSDARG00000089042


Danio rerio

Features
Gene ID: ENSDARG00000089042
  
Biological name :foxb1a
  
Synonyms : forkhead box B1a / foxb1a
  
Possible biological names infered from orthology : forkhead box B1 / Forkhead box protein B1 / FOXB1 / Q64732 / Q99853
  
Species: Danio rerio
  
Chr. number: 25
Strand: -1
Band:
Gene start: 34154171
Gene end: 34156152
  
Corresponding Affymetrix probe sets: Dr.587.1.S1_at (Zebrafish Array)   NM_131285_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000109160
NCBI entrez gene - 30542     See in Manteia.
RefSeq - NM_131285
RefSeq Peptide - NP_571360
swissprot - O73779
ZFIN ID - ZDB-GENE-990616-47
Ensembl - ENSDARG00000089042
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 FOXB1ENSGALG00000027498Gallus gallus
 FOXB1ENSG00000171956Homo sapiens
 Foxb1ENSMUSG00000059246Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
foxb1b / forkhead box B1b / FOXB1* / Q64732* / Q99853* / forkhead box B1* / Forkhead box protein B1 *ENSDARG0000005365081
foxb2 / forkhead box B2 / Q5VYV0* / Q64733* / Forkhead box protein B2 *ENSDARG0000003747556
foxa2 / forkhead box A2 / P35583* / Q9Y261* / Mus musculus forkhead box A2 (Foxa2), transcript variant 3, mRNA.*ENSDARG0000000341135
foxa1 / forkhead box A1ENSDARG0000010213835
foxa3 / forkhead box A3 / P35584* / P55318* / Hepatocyte nuclear factor 3-gamma *ENSDARG0000001278834
Q9DE25 / foxc1a / forkhead box C1a / FOXC1* / Q12948* / Q61572* / forkhead box C1* / Forkhead box protein C1 *ENSDARG0000009148131
Q9DE24 / foxc1b / forkhead box C1b / FOXC1* / Q12948* / Q61572* / forkhead box C1* / Forkhead box protein C1 *ENSDARG0000005539830
foxa / forkhead box A sequenceENSDARG0000008709430
foxl2a / forkhead box L2a / FOXL2* / O88470* / P58012* / forkhead box L2* / Forkhead box protein L2 *ENSDARG0000004218024
foxl1 / forkhead box L1 / Q12952* / Q64731* / Forkhead box protein L1 *ENSDARG0000000813323
zgc:194189ENSDARG0000000801023
foxl2b / forkhead box L2b / FOXL2* / P58012* / forkhead box L2*ENSDARG0000006841723
foxi3b / forkhead box I3b / FOXI1* / Q12951* / Q922I5* / forkhead box I1* / Forkhead box protein I1 *ENSDARG0000000955023
foxi3a / forkhead box I3a / FOXI1* / Q12951* / Q922I5* / forkhead box I1* / Forkhead box protein I1 *ENSDARG0000005592622
foxi1 / forkhead box i1ENSDARG0000010456622
foxi2 / forkhead box I2 / FOXI3* / Q6ZQN5* / A8MTJ6* / forkhead box I3*ENSDARG0000006971522


Protein motifs (from Interpro)
Interpro ID Name
 IPR001766  Fork head domain
 IPR011991  ArsR-like helix-turn-helix domain
 IPR018122  Fork head domain conserved site1
 IPR030456  Fork head domain conserved site 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001756 somitogenesis ISS
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0007412 axon target recognition ISS
 biological_processGO:0008542 visual learning ISS
 biological_processGO:0009653 anatomical structure morphogenesis IBA
 biological_processGO:0021767 mammillary body development ISS
 biological_processGO:0021855 hypothalamus cell migration ISS
 biological_processGO:0022029 telencephalon cell migration ISS
 biological_processGO:0030154 cell differentiation IBA
 biological_processGO:0030901 midbrain development ISS
 biological_processGO:0033504 floor plate development ISS
 biological_processGO:0043524 negative regulation of neuron apoptotic process ISS
 biological_processGO:0061374 mammillothalamic axonal tract development ISS
 biological_processGO:0061379 inferior colliculus development ISS
 biological_processGO:0061381 cell migration in diencephalon ISS
 cellular_componentGO:0005634 nucleus ISS
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding ISS


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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