ENSDARG00000098240


Danio rerio

Features
Gene ID: ENSDARG00000098240
  
Biological name :meis2a
  
Synonyms : meis2a / Meis homeobox 2a
  
Possible biological names infered from orthology : Homeobox protein Meis2 / MEIS2 / Meis homeobox 2 / O14770 / P97367
  
Species: Danio rerio
  
Chr. number: 17
Strand: 1
Band:
Gene start: 52822422
Gene end: 52921236
  
Corresponding Affymetrix probe sets: Dr.10232.1.A1_at (Zebrafish Array)   NM_131896_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000137674
Ensembl peptide - ENSDARP00000155813
Ensembl peptide - ENSDARP00000153019
Ensembl peptide - ENSDARP00000136593
Ensembl peptide - ENSDARP00000137649
NCBI entrez gene - 170454     See in Manteia.
RefSeq - NM_131896
RefSeq - XM_009293345
RefSeq Peptide - NP_571971
swissprot - E7EZR8
swissprot - X1WF61
swissprot - A0A0H2UKR5
ZFIN ID - ZDB-GENE-020122-2
Ensembl - ENSDARG00000098240
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 MEIS2ENSGALG00000039118Gallus gallus
 MEIS2ENSG00000134138Homo sapiens
 Meis2ENSMUSG00000027210Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
meis2a / meis2b / Meis homeobox 2bENSDARG0000007784086
meis1b / Meis homeobox 1 b / MEIS1* / Q60954* / O00470* / Meis homeobox 1* / Homeobox protein Meis1 *ENSDARG0000001207879
meis1a / Meis homeobox 1 a / MEIS1* / Q60954* / O00470* / Meis homeobox 1* / Homeobox protein Meis1 *ENSDARG0000000293766
meis3 / myeloid ecotropic viral integration site 3 / P97368* / Q99687* / Meis homeobox 3* / Homeobox protein Meis3 *ENSDARG0000000279561
pknox2 / pbx/knotted 1 homeobox 2 / Q8BG99* / Q96KN3* / Homeobox protein PKNOX2 *ENSDARG0000005534939
pknox1.1 / pbx/knotted 1 homeobox 1.1 / O70477* / P55347* / PKNOX1* / PBX/knotted 1 homeobox 1* / Homeobox protein PKNOX1 *ENSDARG0000001876535
pknox1.2 / pbx/knotted 1 homeobox 1.2 / O70477* / P55347* / PKNOX1* / PBX/knotted 1 homeobox 1* / Homeobox protein PKNOX1 *ENSDARG0000003654234
tgif1 / TGFB-induced factor homeobox 1 / P70284* / Q15583*ENSDARG0000005933712
FO834857.1 / TGIF2* / Q9GZN2* / TGFB induced factor homeobox 2*ENSDARG000001128959


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR008422  Homeobox KN domain
 IPR009057  Homeobox-like domain superfamily
 IPR032453  Homeobox protein PKNOX/Meis, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0048703 embryonic viscerocranium morphogenesis IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr