ENSG00000007372


Homo sapiens

Features
Gene ID: ENSG00000007372
  
Biological name :PAX6
  
Synonyms : P26367 / paired box 6 / PAX6
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: -1
Band: p13
Gene start: 31784779
Gene end: 31818062
  
Corresponding Affymetrix probe sets: 205646_s_at (Human Genome U133 Plus 2.0 Array)   235795_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000491365
Ensembl peptide - ENSP00000491324
Ensembl peptide - ENSP00000491492
Ensembl peptide - ENSP00000495109
Ensembl peptide - ENSP00000494722
Ensembl peptide - ENSP00000492822
Ensembl peptide - ENSP00000492808
Ensembl peptide - ENSP00000492802
Ensembl peptide - ENSP00000492769
Ensembl peptide - ENSP00000492756
Ensembl peptide - ENSP00000492658
Ensembl peptide - ENSP00000492587
Ensembl peptide - ENSP00000492476
Ensembl peptide - ENSP00000492437
Ensembl peptide - ENSP00000492409
Ensembl peptide - ENSP00000492397
Ensembl peptide - ENSP00000492316
Ensembl peptide - ENSP00000492315
Ensembl peptide - ENSP00000492296
Ensembl peptide - ENSP00000492205
Ensembl peptide - ENSP00000492181
Ensembl peptide - ENSP00000492177
Ensembl peptide - ENSP00000492166
Ensembl peptide - ENSP00000492129
Ensembl peptide - ENSP00000492111
Ensembl peptide - ENSP00000492081
Ensembl peptide - ENSP00000492024
Ensembl peptide - ENSP00000491948
Ensembl peptide - ENSP00000491944
Ensembl peptide - ENSP00000491904
Ensembl peptide - ENSP00000491872
Ensembl peptide - ENSP00000491862
Ensembl peptide - ENSP00000491779
Ensembl peptide - ENSP00000491679
Ensembl peptide - ENSP00000491517
Ensembl peptide - ENSP00000241001
Ensembl peptide - ENSP00000368401
Ensembl peptide - ENSP00000368403
Ensembl peptide - ENSP00000368406
Ensembl peptide - ENSP00000368410
Ensembl peptide - ENSP00000368418
Ensembl peptide - ENSP00000368424
Ensembl peptide - ENSP00000368427
Ensembl peptide - ENSP00000388132
Ensembl peptide - ENSP00000397384
Ensembl peptide - ENSP00000404100
Ensembl peptide - ENSP00000404356
Ensembl peptide - ENSP00000431585
Ensembl peptide - ENSP00000436365
Ensembl peptide - ENSP00000480026
Ensembl peptide - ENSP00000490963
Ensembl peptide - ENSP00000490971
Ensembl peptide - ENSP00000491065
Ensembl peptide - ENSP00000491210
Ensembl peptide - ENSP00000491214
Ensembl peptide - ENSP00000491229
Ensembl peptide - ENSP00000491267
Ensembl peptide - ENSP00000491280
Ensembl peptide - ENSP00000491295
NCBI entrez gene - 5080     See in Manteia.
OMIM - 607108
RefSeq - NM_001310161
RefSeq - NM_000280
RefSeq - NM_001127612
RefSeq - NM_001258462
RefSeq - NM_001258463
RefSeq - NM_001258464
RefSeq - NM_001258465
RefSeq - NM_001310158
RefSeq - NM_001310159
RefSeq - NM_001310160
RefSeq - NM_001604
RefSeq Peptide - NP_001245391
RefSeq Peptide - NP_001297087
RefSeq Peptide - NP_001297088
RefSeq Peptide - NP_001297089
RefSeq Peptide - NP_001297090
RefSeq Peptide - NP_001595
RefSeq Peptide - NP_001245392
RefSeq Peptide - NP_001245393
RefSeq Peptide - NP_001245394
RefSeq Peptide - NP_000271
RefSeq Peptide - NP_001121084
swissprot - A0A1W2PQG7
swissprot - A0A1W2PQG3
swissprot - A0A1W2PQA8
swissprot - A0A1W2PQ31
swissprot - A0A1W2PPN2
swissprot - A0A1W2PPM5
swissprot - A0A1W2PPJ2
swissprot - A0A1W2PPH0
swissprot - A0A1W2PPG3
swissprot - A0A1W2PP89
swissprot - A0A1W2PP27
swissprot - F1T0F8
swissprot - P26367
swissprot - A0A1W2PNS7
swissprot - Q66SS1
swissprot - E9PKM0
swissprot - D1KF47
swissprot - B1B1J0
swissprot - B1B1I9
swissprot - B1B1I8
swissprot - A0A1X7SBT0
swissprot - A0A1W2PSB5
swissprot - A0A1W2PSA8
swissprot - A0A1W2PS91
swissprot - A0A1W2PRU4
swissprot - A0A1W2PRW7
swissprot - A0A1W2PRS6
swissprot - A0A1W2PRH6
swissprot - A0A1W2PRG3
swissprot - A0A1W2PRA8
swissprot - A0A1W2PRA4
swissprot - A0A1W2PR58
swissprot - A0A1W2PQW3
swissprot - A0A1W2PQM7
swissprot - A0A1W2PQL7
swissprot - A0A1W2PQJ8
Ensembl - ENSG00000007372
  
Related genetic diseases (OMIM): 120430 - ?Coloboma of optic nerve, 120430
  120200 - ?Coloboma, ocular, 120200
  106210 - Aniridia, 106210
  604229 - Anterior segment dysgenesis 5, multiple subtypes, 604229
  136520 - Foveal hypoplasia 1, 136520
  148190 - Keratitis, 148190
  165550 - Optic nerve hypoplasia, 165550

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PAX6ENSGALG00000012123Gallus gallus
 Pax6ENSMUSG00000027168Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PAX7 / P23759 / paired box 7ENSG0000000970938
PAX3 / P23760 / paired box 3ENSG0000013590336
PAX5 / Q02548 / paired box 5ENSG0000019609233
PAX8 / Q06710 / paired box 8ENSG0000012561833
PAX4 / O43316 / paired box 4ENSG0000010633133
PAX2 / Q02962 / paired box 2ENSG0000007589132
PAX1 / P15863 / paired box 1ENSG0000012581328
PAX9 / P55771 / paired box 9ENSG0000019880728


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR001523  Paired domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR036388  Winged helix-like DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0000132 establishment of mitotic spindle orientation IEA
 biological_processGO:0001568 blood vessel development IMP
 biological_processGO:0001654 eye development TAS
 biological_processGO:0001709 cell fate determination IEA
 biological_processGO:0001764 neuron migration IEA
 biological_processGO:0001933 negative regulation of protein phosphorylation IEA
 biological_processGO:0002052 positive regulation of neuroblast proliferation IEA
 biological_processGO:0002088 lens development in camera-type eye IEA
 biological_processGO:0003002 regionalization IEA
 biological_processGO:0003309 type B pancreatic cell differentiation IEA
 biological_processGO:0003322 pancreatic A cell development IMP
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006366 transcription by RNA polymerase II IMP
 biological_processGO:0007224 smoothened signaling pathway IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007409 axonogenesis IEA
 biological_processGO:0007411 axon guidance IEA
 biological_processGO:0007417 central nervous system development TAS
 biological_processGO:0007420 brain development IEA
 biological_processGO:0007435 salivary gland morphogenesis IEA
 biological_processGO:0007601 visual perception TAS
 biological_processGO:0008285 negative regulation of cell proliferation IEA
 biological_processGO:0009611 response to wounding IEP
 biological_processGO:0009786 regulation of asymmetric cell division IEA
 biological_processGO:0009887 animal organ morphogenesis TAS
 biological_processGO:0009950 dorsal/ventral axis specification IEA
 biological_processGO:0009952 anterior/posterior pattern specification IEA
 biological_processGO:0009953 dorsal/ventral pattern formation IEA
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0010628 positive regulation of gene expression IMP
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0021543 pallium development IEA
 biological_processGO:0021778 oligodendrocyte cell fate specification IEA
 biological_processGO:0021796 cerebral cortex regionalization IEA
 biological_processGO:0021798 forebrain dorsal/ventral pattern formation IEA
 biological_processGO:0021902 commitment of neuronal cell to specific neuron type in forebrain IEA
 biological_processGO:0021905 forebrain-midbrain boundary formation IEA
 biological_processGO:0021912 regulation of transcription from RNA polymerase II promoter involved in spinal cord motor neuron fate specification IEA
 biological_processGO:0021913 regulation of transcription from RNA polymerase II promoter involved in ventral spinal cord interneuron specification IEA
 biological_processGO:0021918 regulation of transcription from RNA polymerase II promoter involved in somatic motor neuron fate commitment IEA
 biological_processGO:0021978 telencephalon regionalization IEA
 biological_processGO:0021983 pituitary gland development IEA
 biological_processGO:0021986 habenula development IEA
 biological_processGO:0023019 signal transduction involved in regulation of gene expression IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0030216 keratinocyte differentiation IEA
 biological_processGO:0030334 regulation of cell migration IEA
 biological_processGO:0030858 positive regulation of epithelial cell differentiation IEA
 biological_processGO:0030900 forebrain development IEA
 biological_processGO:0032808 lacrimal gland development IEA
 biological_processGO:0033365 protein localization to organelle IEA
 biological_processGO:0042462 eye photoreceptor cell development IEA
 biological_processGO:0042593 glucose homeostasis IMP
 biological_processGO:0043010 camera-type eye development IEA
 biological_processGO:0045165 cell fate commitment IEA
 biological_processGO:0045665 negative regulation of neuron differentiation IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IMP
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II ISS
 biological_processGO:0048505 regulation of timing of cell differentiation IEA
 biological_processGO:0048596 embryonic camera-type eye morphogenesis IEA
 biological_processGO:0048663 neuron fate commitment NAS
 biological_processGO:0048708 astrocyte differentiation IEA
 biological_processGO:0050680 negative regulation of epithelial cell proliferation IEA
 biological_processGO:0050767 regulation of neurogenesis IEA
 biological_processGO:0050768 negative regulation of neurogenesis ISS
 biological_processGO:0060041 retina development in camera-type eye IEA
 biological_processGO:0061072 iris morphogenesis IMP
 biological_processGO:0061303 cornea development in camera-type eye IMP
 biological_processGO:1990830 cellular response to leukemia inhibitory factor IEA
 biological_processGO:2000178 negative regulation of neural precursor cell proliferation IEA
 cellular_componentGO:0000790 nuclear chromatin IDA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0000979 RNA polymerase II core promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IDA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity TAS
 molecular_functionGO:0004842 ubiquitin-protein transferase activity ISS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008134 transcription factor binding ISS
 molecular_functionGO:0019901 protein kinase binding ISS
 molecular_functionGO:0031625 ubiquitin protein ligase binding IEA
 molecular_functionGO:0035035 histone acetyltransferase binding ISS
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IEA
 molecular_functionGO:0070410 co-SMAD binding IEA
 molecular_functionGO:0070412 R-SMAD binding IPI
 molecular_functionGO:0071837 HMG box domain binding IEA


Pathways (from Reactome)
Pathway description
Regulation of gene expression in beta cells
Synthesis, secretion, and inactivation of Glucagon-like Peptide-1 (GLP-1)
Synthesis, secretion, and inactivation of Glucose-dependent Insulinotropic Polypeptide (GIP)
Activation of anterior HOX genes in hindbrain development during early embryogenesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000062 Ambiguous genitalia 
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 HP:0000076 Vesicoureteral reflux "Abnormal (retrograde) movement of urine from the bladder into ureters or kidneys related to inadequacy of the valvular mechanism at the ureterovesicular junction or other causes." [HPO:curators]
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 HP:0000083 Renal failure 
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 HP:0000112 Nephropathy "A nonspecific term referring to disease or damage of the kidneys." [HPO:curators]
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 HP:0000130 Abnormality of the uterus "An abnormality of the uterus (womb)." [HPO:curators]
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 HP:0000142 Abnormality of the vagina 
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 HP:0000150 Gonadoblastoma 
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 HP:0000232 Everted lower lip 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000298 Mask-like facies 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000364 Hearing abnormality 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000491 Keratitis "Inflammation of the cornea." [HPO:curators]
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000504 Abnormality of vision "Abnormality of eyesight (visual perception)." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000523 Subcapsular cataracts 
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 HP:0000526 Aniridia "Congenital absence of the iris." [HPO:curators]
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 HP:0000538 Pseudopapilledema 
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 HP:0000541 Detached retina 
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 HP:0000567 Chorioretinal coloboma 
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 HP:0000572 Visual loss 
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 HP:0000588 Optic nerve coloboma 
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 HP:0000609 Optic nerve hypoplasia 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000646 Amblyopia "Reduced visual acuity that is uncorrectable by lenses in the absence of detectable anatomic defects in the eye or visual pathways. Ambylopia can result from visual deprivation during the critical period of development of visual abilities which lasts to about the age of 8 years. Thus, ambylopia can result from strabismus, anisometropia, or high hypermetropia in there is a failure to form a focused image in one or both eyes." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000659 Peters anomaly 
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 HP:0001087 Congenital glaucoma 
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 HP:0001249 Mental retardation 
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001350 Slurred speech 
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 HP:0001428 Somatic mutation 
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 HP:0001466 Contiguous gene syndrome 
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 HP:0001510 Growth retardation 
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002119 Ventriculomegaly 
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 HP:0002126 Polymicrogyria "A congenital abnormality of the cerebral hemisphere characterized by an excessive number of small gyri (convolutions) on the surface of the brain." [HPO:curators]
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 HP:0002168 Scanning speech 
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 HP:0002174 Postural tremor "A type of tremors that is triggered by holding a limb in a fixed position." [HPO:curators]
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002667 Nephroblastoma (Wilms tumor) "A kind of renal tumor primarily affecting children. It is characterized by an abnormal proliferation of the metanephric blastema cells, which are believed to be primitive embryologic cells of the kidney. Clinically, nephroblatoma usually presents as an abdominal mass, and in some cases with abdominal pain, hypertension, hematuria, and fever." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004414 Abnormality of the pulmonary artery 
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 HP:0006934 Congenital nystagmus "Nystagmus dating from or present at birth." [HPO:curators]
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 HP:0007299 Dysfunction of lateral corticospinal tracts 
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 HP:0007440 Generalized hyperpigmentation 
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 HP:0007663 Decreased central vision 
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 HP:0007676 Hypoplasia of the iris 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0007710 Peripheral vitreous opacities 
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 HP:0007750 Foveal hypoplasia 
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 HP:0007759 Corneal opacities, not impairing visual acuity 
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 HP:0007766 Hypoplastic optic disks 
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 HP:0007819 Presenile cataracts 
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 HP:0007957 Variable degree of corneal opacities 
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 HP:0008053 Aplasia/Hypoplasia of the iris "Absence or underdevelopment of the iris." [HPO:curators]
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 HP:0008059 Aplasia/Hypoplasia of the macula 
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 HP:0010464 Streak ovary "A developmental disorder characterized by the progressive loss of primordial germ cells in the developing ovaries of an embryo, leading to hypoplastic ovaries composed of wavy connective tissue with occasional clumps of granulosa cells, and frequenty mesonephric or hilar cells." [HPO:curators]
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 HP:0011480 Unilateral microphthalmos "A developmental anomaly characterized by abnormal smallness of one eye." [DDD:ncarter]
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 HP:0011483 Anterior synechiae of the anterior chamber "Adhesions between the iris and the cornea." [DDD:ncarter]
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 HP:0011493 Central opacification of the cornea "Reduced transparency of the central portion of the corneal stroma." [DDD:ncarter]
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 HP:0012521 Optic nerve aplasia "Congenital absence of the `optic nerve` (FMA:50863)." [HPO:probinson]
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 HP:0012547 Abnormal involuntary eye movements "Anomalous movements of the eyes that occur without the subject wanting them to happen." [HPO:probinson]
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 HP:0012758 Neurodevelopmental delay 
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 HP:0012795 Abnormality of the optic disc "A morphological abnormality of the optic disc, i.e., of the portion of the optic nerve clinically visible on fundoscopic examination." [HPO:probinson]
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 HP:0030534 Abnormal best corrected visual acuity test 
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 HP:0031159 Thinning of Descemet membrane "A reduction in the thickness of Descemet s membrane." []
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 HP:0100022 Abnormality of movement "An abnormality of movement with a neurological basis characterized by changes in coordination and speed of voluntary movements." [HPO:probinson]
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 HP:0100627 Displacement of the external urethral meatus "A displacement of the external urethral orifice from its normal position (in males normally placed at the tip of glans penis, in females normally placed about 2.5 cm behind the glans clitoridis and immediately in front of that of the vagina)." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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