ENSG00000125813


Homo sapiens

Features
Gene ID: ENSG00000125813
  
Biological name :PAX1
  
Synonyms : P15863 / paired box 1 / PAX1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 20
Strand: 1
Band: p11.22
Gene start: 21705659
Gene end: 21718486
  
Corresponding Affymetrix probe sets: 1553492_a_at (Human Genome U133 Plus 2.0 Array)   214401_at (Human Genome U133 Plus 2.0 Array)   231445_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000410355
Ensembl peptide - ENSP00000481334
Ensembl peptide - ENSP00000381499
NCBI entrez gene - 5075     See in Manteia.
OMIM - 167411
RefSeq - NM_001257096
RefSeq - NM_006192
RefSeq Peptide - NP_001244025
RefSeq Peptide - NP_006183
swissprot - A0A087WXV5
swissprot - P15863
Ensembl - ENSG00000125813
  
Related genetic diseases (OMIM): 615560 - ?Otofaciocervical syndrome 2, 615560

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pax1aENSDARG00000008203Danio rerio
 pax1bENSDARG00000073814Danio rerio
 PAX1ENSGALG00000039040Gallus gallus
 Pax1ENSMUSG00000037034Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PAX9 / P55771 / paired box 9ENSG0000019880741
PAX8 / Q06710 / paired box 8ENSG0000012561827
PAX2 / Q02962 / paired box 2ENSG0000007589127
PAX5 / Q02548 / paired box 5ENSG0000019609227
PAX7 / P23759 / paired box 7ENSG0000000970926
PAX3 / P23760 / paired box 3ENSG0000013590325
PAX6 / P26367 / paired box 6ENSG0000000737223
PAX4 / O43316 / paired box 4ENSG0000010633119


Protein motifs (from Interpro)
Interpro ID Name
 IPR001523  Paired domain
 IPR009057  Homeobox-like domain superfamily
 IPR033206  Paired box protein PAX1
 IPR036388  Winged helix-like DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001501 skeletal system development TAS
 biological_processGO:0001756 somitogenesis IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II TAS
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007389 pattern specification process IEA
 biological_processGO:0008283 cell proliferation IEA
 biological_processGO:0043367 CD4-positive, alpha-beta T cell differentiation IEA
 biological_processGO:0043374 CD8-positive, alpha-beta T cell differentiation IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048538 thymus development IEA
 biological_processGO:0060017 parathyroid gland development IEA
 biological_processGO:0060349 bone morphogenesis IEA
 biological_processGO:0061056 sclerotome development IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000265 Mastoiditis 
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 HP:0000293 Full cheeks 
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 HP:0000308 Microretrognathia 
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 HP:0000324 Facial asymmetry 
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000400 Large ears 
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 HP:0000405 Hearing loss, conductive 
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 HP:0000410 Mixed hearing loss 
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 HP:0000411 Protruding ears 
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 HP:0000413 External auditory canal atresia "Absence or failure to form of the external auditory canal." [HPO:curators]
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000522 Alacrima 
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 HP:0000592 Blue sclerae 
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 HP:0000670 Carious teeth 
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 HP:0000689 Dental malocclusion "Dental malocclusion refers to an abnormality of the occlusion, or alignment, of the teeth and the way the upper and lower teeth fit together, resulting in overcrowding of teeth or in abnormal bite patterns." [HPO:curators]
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 HP:0000889 Abnormality of the clavicles "Any abnormality of the clavicles (collar bones)." [HPO:curators]
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 HP:0001182 Tapered fingers 
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 HP:0001249 Mental retardation 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001276 Hypertonia 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0002167 Neurological speech impairment 
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 HP:0002342 Mental retardation, moderate "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 35-49." [HPO:curators]
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 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0003691 Scapular winging 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004467 Preauricular sinus "The preauricular sinus is a benign congenital lesion of the preauricular soft tissue consisting of a blind-ending narrow tube or pit. It is also known as preauricular pit, preauricular fistula, preauricular tract and preauricular cyst. It can be asymptomatic or present as an infected and discharging sinus. It presents as a small pit adjacent to the external ear usually located at the anterior margin of the ascending limb of the helix." [HPO:curators]
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0007477 Abnormal dermatoglyphics "An abnormality of dermatoglyphs (fingerprints), which are present on fingers, palms, toes, and soles." [HPO:curators]
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 HP:0007678 Nasolacrimal duct stenosis 
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 HP:0008678 Renal hypoplasia/aplasia 
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 HP:0009738 Abnormal antihelix "An abnormal form of the antihelix, which is the curved prominence of cartilage, parallel with and in front of the helix, and which divides into the crura antihelicis, between which is a triangular depression, the fossa triangularis." [HPO:curators]
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 HP:0030084 Clinodactyly "An angulation of a digit at an interphalangeal joint in the plane of the palm (finger) or sole (toe)." [pmid:16252026]
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 HP:0200021 Rounded shoulders 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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