ENSG00000125618


Homo sapiens

Features
Gene ID: ENSG00000125618
  
Biological name :PAX8
  
Synonyms : paired box 8 / PAX8 / Q06710
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: q14.1
Gene start: 113215997
Gene end: 113278950
  
Corresponding Affymetrix probe sets: 121_at (Human Genome U133 Plus 2.0 Array)   207921_x_at (Human Genome U133 Plus 2.0 Array)   207923_x_at (Human Genome U133 Plus 2.0 Array)   207924_x_at (Human Genome U133 Plus 2.0 Array)   209552_at (Human Genome U133 Plus 2.0 Array)   213917_at (Human Genome U133 Plus 2.0 Array)   214528_s_at (Human Genome U133 Plus 2.0 Array)   221990_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000451213
Ensembl peptide - ENSP00000395498
Ensembl peptide - ENSP00000451240
Ensembl peptide - ENSP00000452547
Ensembl peptide - ENSP00000451618
Ensembl peptide - ENSP00000263334
Ensembl peptide - ENSP00000263335
Ensembl peptide - ENSP00000314750
Ensembl peptide - ENSP00000380768
NCBI entrez gene - 7849     See in Manteia.
OMIM - 167415
RefSeq - XM_017004879
RefSeq - NM_003466
RefSeq - NM_013952
RefSeq - NM_013953
RefSeq - NM_013992
RefSeq - XM_011511790
RefSeq - XM_011511791
RefSeq - XM_011511792
RefSeq - XM_011511793
RefSeq - XM_011511794
RefSeq - XM_017004878
RefSeq Peptide - NP_039246
RefSeq Peptide - NP_039247
RefSeq Peptide - NP_054698
RefSeq Peptide - NP_003457
swissprot - G3V3F3
swissprot - H0YJD1
swissprot - H0YJZ5
swissprot - A0A024R4X8
swissprot - Q06710
swissprot - R9W7C9
swissprot - A0A140TA56
swissprot - A0A024R524
Ensembl - ENSG00000125618
  
Related genetic diseases (OMIM): 218700 - Hypothyroidism, congenital, due to thyroid dysgenesis or hypoplasia, 218700

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pax8ENSDARG00000015879Danio rerio
 Pax8ENSMUSG00000026976Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PAX5 / Q02548 / paired box 5ENSG0000019609252
PAX2 / Q02962 / paired box 2ENSG0000007589149
PAX7 / P23759 / paired box 7ENSG0000000970933
PAX3 / P23760 / paired box 3ENSG0000013590333
PAX6 / P26367 / paired box 6ENSG0000000737232
PAX1 / P15863 / paired box 1ENSG0000012581332
PAX9 / P55771 / paired box 9ENSG0000019880728
PAX4 / O43316 / paired box 4ENSG0000010633126


Protein motifs (from Interpro)
Interpro ID Name
 IPR001523  Paired domain
 IPR009057  Homeobox-like domain superfamily
 IPR022130  Paired-box protein 2 C-terminal
 IPR036388  Winged helix-like DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001655 urogenital system development IEA
 biological_processGO:0001656 metanephros development IEA
 biological_processGO:0001658 branching involved in ureteric bud morphogenesis IEP
 biological_processGO:0001822 kidney development IEP
 biological_processGO:0001823 mesonephros development IEA
 biological_processGO:0003281 ventricular septum development IEA
 biological_processGO:0003337 mesenchymal to epithelial transition involved in metanephros morphogenesis IEP
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0006790 sulfur compound metabolic process IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007417 central nervous system development IEA
 biological_processGO:0009653 anatomical structure morphogenesis TAS
 biological_processGO:0010667 negative regulation of cardiac muscle cell apoptotic process IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0030878 thyroid gland development IEA
 biological_processGO:0038194 thyroid-stimulating hormone signaling pathway IEA
 biological_processGO:0039003 pronephric field specification IEA
 biological_processGO:0042472 inner ear morphogenesis IEA
 biological_processGO:0042981 regulation of apoptotic process IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048793 pronephros development IEA
 biological_processGO:0071371 cellular response to gonadotropin stimulus IDA
 biological_processGO:0071599 otic vesicle development IEP
 biological_processGO:0072050 S-shaped body morphogenesis IEA
 biological_processGO:0072073 kidney epithelium development IEA
 biological_processGO:0072108 positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis IEA
 biological_processGO:0072164 mesonephric tubule development IEA
 biological_processGO:0072207 metanephric epithelium development IEP
 biological_processGO:0072221 metanephric distal convoluted tubule development IEA
 biological_processGO:0072278 metanephric comma-shaped body morphogenesis IEP
 biological_processGO:0072284 metanephric S-shaped body morphogenesis IEP
 biological_processGO:0072289 metanephric nephron tubule formation IEA
 biological_processGO:0072305 negative regulation of mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis IEA
 biological_processGO:0072307 regulation of metanephric nephron tubule epithelial cell differentiation IEA
 biological_processGO:0090190 positive regulation of branching involved in ureteric bud morphogenesis IEA
 biological_processGO:1900212 negative regulation of mesenchymal cell apoptotic process involved in metanephros development IEA
 biological_processGO:1900215 negative regulation of apoptotic process involved in metanephric collecting duct development IEA
 biological_processGO:1900218 negative regulation of apoptotic process involved in metanephric nephron tubule development IEA
 biological_processGO:2000594 positive regulation of metanephric DCT cell differentiation IEA
 biological_processGO:2000611 positive regulation of thyroid hormone generation IEA
 biological_processGO:2000612 regulation of thyroid-stimulating hormone secretion IMP
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000979 RNA polymerase II core promoter sequence-specific DNA binding IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IMP
 molecular_functionGO:0003700 DNA-binding transcription factor activity TAS
 molecular_functionGO:0004996 thyroid-stimulating hormone receptor activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000158 Macroglossia "Increased length and width of the tongue." [pmid:19125428]
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 HP:0000239 Large fontanelles "In newborns, the two frontal bones, two parietal bones, and one occipital bone are joined by fibrous sutures, which form a small posterior fontanelle, and a larger, diamond-shaped anterior fontanelle. These regions allow for the skull to pass the birth canal and for later growth. The fontanelles gradually ossify, whereby the posterior fontanelle usually closes by eight weeks and the anterior fontanelle by the 9th to 16th month of age. Large fontanelles are diagnosed if the fontanelles are larger than age-dependent norms." [HPO:curators]
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 HP:0000280 Coarse facial features 
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 HP:0000821 Hypothyroidism 
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 HP:0000851 Congenital hypothyroidism 
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 HP:0000853 Goiter "An enlargement of the thyroid gland." [HPO:curators]
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 HP:0000952 Jaundice "Yellow pigmentation of the skin or sclera due to bilirubin, which in turn is the result of increased bilirubin concentration in the bloodstream." [HPO:curators]
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 HP:0000958 Dry skin 
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001254 Lethargy 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001510 Growth retardation 
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 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
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 HP:0001615 Hoarse cry 
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 HP:0001662 Bradycardia 
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 HP:0002019 Constipation 
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 HP:0002045 Hypothermia 
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 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0002904 Hyperbilirubinemia 
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 HP:0002925 Increased serum thyroid-stimulating hormone (TSH) 
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 HP:0003270 Abdominal distention "Enlargement or distention of the abdomen, which can be a secondary feature associated with a number of conditions such as bowel obstruction." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004491 Large posterior fontanelle "An enlargement of the posterior fontanelle relative to age-dependent norms." [HPO:curators]
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 HP:0005990 Hypoplastic thyroid 
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 HP:0008191 Athyroidal hypothyroidism 
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 HP:0008872 Feeding problems in infancy 
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 HP:0010307 Stridor "Stridor is a high pitched sound resulting from turbulent air flow in the upper airway." [HPO:curators]
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 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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 HP:0100028 Ectopic thyroid "`Mislocalised` (PATO:0000628) `thyroid gland` (FMA:9603)." [HPO:sdoelken]
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 HP:0100786 Hypersomnia 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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