ENSG00000135903


Homo sapiens

Features
Gene ID: ENSG00000135903
  
Biological name :PAX3
  
Synonyms : P23760 / paired box 3 / PAX3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: q36.1
Gene start: 222199888
Gene end: 222298996
  
Corresponding Affymetrix probe sets: 207679_at (Human Genome U133 Plus 2.0 Array)   207680_x_at (Human Genome U133 Plus 2.0 Array)   216059_at (Human Genome U133 Plus 2.0 Array)   231666_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000386750
Ensembl peptide - ENSP00000375922
Ensembl peptide - ENSP00000386817
Ensembl peptide - ENSP00000258387
Ensembl peptide - ENSP00000338767
Ensembl peptide - ENSP00000342092
Ensembl peptide - ENSP00000343052
Ensembl peptide - ENSP00000375921
NCBI entrez gene - 5077     See in Manteia.
OMIM - 606597
RefSeq - NM_181457
RefSeq - NM_000438
RefSeq - NM_001127366
RefSeq - NM_013942
RefSeq - NM_181458
RefSeq - NM_181459
RefSeq - NM_181460
RefSeq - NM_181461
RefSeq Peptide - NP_852126
RefSeq Peptide - NP_000429
RefSeq Peptide - NP_001120838
RefSeq Peptide - NP_039230
RefSeq Peptide - NP_852122
RefSeq Peptide - NP_852123
RefSeq Peptide - NP_852124
RefSeq Peptide - NP_852125
swissprot - A0A024R470
swissprot - P23760
Ensembl - ENSG00000135903
  
Related genetic diseases (OMIM): 122880 - Craniofacial-deafness-hand syndrome, 122880
  148820 - Waardenburg syndrome, type 3, 148820
  193500 - Waardenburg syndrome, type 1, 193500
  268220 - Rhabdomyosarcoma 2, alveolar, 268220

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pax3aENSDARG00000010192Danio rerio
 pax3bENSDARG00000028348Danio rerio
 PAX3ENSGALG00000030944Gallus gallus
 Pax3ENSMUSG00000004872Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PAX7 / P23759 / paired box 7ENSG0000000970974
PAX6 / P26367 / paired box 6ENSG0000000737231
PAX5 / Q02548 / paired box 5ENSG0000019609230
PAX8 / Q06710 / paired box 8ENSG0000012561829
PAX2 / Q02962 / paired box 2ENSG0000007589128
PAX1 / P15863 / paired box 1ENSG0000012581327
PAX9 / P55771 / paired box 9ENSG0000019880726
PAX4 / O43316 / paired box 4ENSG0000010633122


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR001523  Paired domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR022106  Paired box protein 7, C-terminal
 IPR036388  Winged helix-like DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II TAS
 biological_processGO:0006915 apoptotic process TAS
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0007517 muscle organ development IEA
 biological_processGO:0007605 sensory perception of sound TAS
 biological_processGO:0009887 animal organ morphogenesis TAS
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IDA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0043565 sequence-specific DNA binding IDA
 molecular_functionGO:0071837 HMG box domain binding IEA


Pathways (from Reactome)
Pathway description
HATs acetylate histones


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000160 Microstomia "The presence of an abnormally small `mouth` (FMA:49184)." [HPO:curators]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000202 Cleft lip/palate 
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 HP:0000204 Cleft lip "A gap in the `upper lip` (FMA:59817). This is a congenital defect resulting from nonfusion of tissues of the lip during embryonal development." [HPO:probinson]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000275 Narrow face 
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 HP:0000303 Mandibular prognathia "Abnormal prominence of the chin related to an abnormally long mandible." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000319 Flat philtrum 
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 HP:0000327 Hypoplasia of the maxilla "Underdevelopment of the `Maxilla` (FMA:9711)." [HPO:probinson]
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 HP:0000365 Hearing loss 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000426 Prominent nasal bridge 
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 HP:0000430 Hypoplastic nasal alae "Thinned, deficient, or excessively arched `ala nasi` (FMA:59519)." [pmid:19152422]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000446 Narrow nasal bridge 
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 HP:0000457 Flat nose 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000504 Abnormality of vision "Abnormality of eyesight (visual perception)." [HPO:curators]
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 HP:0000506 Telecanthus "An abnormally increased distance between the medial canthi (angle between eyelids) of the eyelids." [HPO:curators]
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000564 Lacrimal duct atresia 
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 HP:0000574 Thick eyebrows 
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 HP:0000581 Blepharophimosis "Reduced width of the palpebral fissures." [HPO:sdoelken]
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 HP:0000632 Lacrimation abnormality 
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 HP:0000635 Blue irides 
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 HP:0000664 Synophrys "Fusion of the left and right `eyebrow` (FMA:54237)." [HPO:probinson]
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 HP:0000912 Sprengel anomaly "A complex deformity characterized by congenital elevation of the scapula." [HPO:curators]
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 HP:0001053 Hypopigmented skin patches 
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 HP:0001063 Acrocyanosis 
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 HP:0001100 Heterochromia iridis "Heterochromia iridis is a difference in the color of the iris in the two eyes." [HPO:curators]
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 HP:0001156 Brachydactyly 
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 HP:0001193 Ulnar deviation of the hand or of fingers of the hand 
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 HP:0001249 Mental retardation 
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 HP:0001258 Spastic paraplegia 
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 HP:0001387 Joint stiffness "Joint stiffness is a perceived sensation of tightness in a joint or joints when attempting to move them after a period of inactivity. Joint stiffness typically subsides over time." [HPO:curators]
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 HP:0001452 Autosomal dominant contiguous gene syndrome 
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 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
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 HP:0002211 White forelock 
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 HP:0002216 Premature graying of hair 
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 HP:0002226 White eyebrows 
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 HP:0002227 White eyelashes 
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 HP:0002251 Congenital megacolon "An abnormality resulting from a lack of intestinal ganglion cells (i.e., an aganglionic section of bowel) that results in bowel obstruction with enlargement of the colon." [HPO:curators]
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 HP:0002414 Spina bifida "Incomplete closure of the embryonic neural tube, whereby some vertebral arches remain unfused and open." [HPO:curators]
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 HP:0002435 Meningocele 
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 HP:0002475 Meningomyelocele 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002779 Tracheomalacia 
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 HP:0002946 Supernumerary vertebrae 
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 HP:0003049 Ulnar deviation of the wrist 
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 HP:0003196 Nasal hypoplasia "Underdevelopment of the `nose` (FMA:46472)." [HPO:probinson]
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 HP:0003250 Absent vagina 
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 HP:0003691 Scapular winging 
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 HP:0003828 Variable expressivity 
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 HP:0005048 fusion of carpal bones, especially capitate and hamate 
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0005815 Supernumerary ribs 
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 HP:0006779 Alveolar rhabdomyosarcoma 
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 HP:0007443 Partial albinism 
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 HP:0007894 Hypopigmentation of the fundus 
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 HP:0007990 Hypoplastic iris stroma 
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 HP:0008527 Congenital sensorineural hearing loss 
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 HP:0009465 Ulnar deviation of fingers 
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 HP:0009473 Joint contractures involving the joints of the hand 
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 HP:0009487 Ulnar deviation of the hand "A deviation of the orientation of the hand in the direction of the ulna (i.e., towards the little finger)." [HPO:curators]
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 HP:0009702 Synostosis involving the carpal bones 
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 HP:0009924 Aplasia/Hypoplasia involving the nose "Underdevelopment or absence of the nose or parts thereof." [HPO:curators]
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 HP:0010554 Cutaneous syndactyly of the fingers "Webbing or fusion of the fingers involving soft parts only." [HPO:curators]
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 HP:0010804 Tented upper lip vermilion "Triangular appearance of the oral aperture with the apex in the midpoint of the upper vermilion and the lower vermilion forming the base." [pmid:19125428]
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 HP:0011364 White hair "Hypopigmented hair that appears white." [DDD:cmoss]
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 HP:0012368 Flat face "Absence of concavity or convexity of the face when viewed in profile." [pmid:19125436]
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 HP:0030084 Clinodactyly "An angulation of a digit at an interphalangeal joint in the plane of the palm (finger) or sole (toe)." [pmid:16252026]
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 HP:0030680 Abnormality of cardiovascular system morphology "Any structural anomaly of the heart and great vessels." []
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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 HP:0100750 Atelectasis 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000084676 NCOA1 / Q15788 / nuclear receptor coactivator 1  / reaction / complex






 

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