ENSG00000064218


Homo sapiens

Features
Gene ID: ENSG00000064218
  
Biological name :DMRT3
  
Synonyms : DMRT3 / doublesex and mab-3 related transcription factor 3 / Q9NQL9
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 9
Strand: 1
Band: p24.3
Gene start: 976964
Gene end: 991731
  
Corresponding Affymetrix probe sets: 231800_s_at (Human Genome U133 Plus 2.0 Array)   233930_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000190165
Ensembl peptide - ENSP00000387472
NCBI entrez gene - 58524     See in Manteia.
OMIM - 614754
RefSeq - NM_021240
RefSeq Peptide - NP_067063
swissprot - Q5W0Z5
swissprot - Q9NQL9
Ensembl - ENSG00000064218
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 dmrt3aENSDARG00000035290Danio rerio
 DMRT3ENSGALG00000010161Gallus gallus
 Dmrt3ENSMUSG00000042372Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
DMRTA2 / Q96SC8 / DMRT like family A2ENSG0000014270031
DMRTA1 / Q5VZB9 / DMRT like family A1ENSG0000017639927
DMRT2 / Q9Y5R5 / doublesex and mab-3 related transcription factor 2ENSG0000017325323
DMRTC2 / Q8IXT2 / DMRT like family C2ENSG0000014202517
DMRT1 / Q9Y5R6 / doublesex and mab-3 related transcription factor 1ENSG0000013709016
DMRTB1 / Q96MA1 / DMRT like family B with proline rich C-terminal 1ENSG0000014300615
Q5HYR2 / DMRTC1B / DMRT like family C1BENSG000001849116
DMRTC1 / Q5HYR2 / DMRT like family C1ENSG000002695026


Protein motifs (from Interpro)
Interpro ID Name
 IPR001275  DM DNA-binding domain
 IPR005173  DMRTA motif
 IPR009060  UBA-like superfamily
 IPR026607  DMRT/protein doublesex/protein male abnormal 3
 IPR036407  DM DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007548 sex differentiation NAS
 biological_processGO:0007628 adult walking behavior IEA
 biological_processGO:0019226 transmission of nerve impulse IEA
 biological_processGO:0021521 ventral spinal cord interneuron specification IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0042487 regulation of odontogenesis of dentin-containing tooth IEA
 biological_processGO:0046661 male sex differentiation IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000027 Azoospermia 
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000030 Gonadoblastoma, male 
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 HP:0000045 Abnormality of the scrotum 
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000054 Micropenis 
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 HP:0000058 Abnormality of the labia 
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 HP:0000062 Ambiguous genitalia 
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 HP:0000100 Nephrotic syndrome 
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 HP:0000133 Gonadal dysgenesis 
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 HP:0000149 Gonadoblastoma, female 
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 HP:0000771 Gynecomastia 
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 HP:0000786 Primary amenorrhea 
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 HP:0000815 Hypergonadotropic hypogonadism "Reduced function of the gonads (testes in males or ovaries in females) associated with excess pituitary gonadotropin secretion and resulting in delayed sexual development and growth delay." [HPO:curators]
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 HP:0000823 Delayed puberty 
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 HP:0000846 Adrenal insufficiency 
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 HP:0000868 Decreased fertility in females 
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 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
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 HP:0002215 Sparse axillary hair 
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 HP:0002225 Sparse pubic hair 
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 HP:0002667 Nephroblastoma (Wilms tumor) "A kind of renal tumor primarily affecting children. It is characterized by an abnormal proliferation of the metanephric blastema cells, which are believed to be primitive embryologic cells of the kidney. Clinically, nephroblatoma usually presents as an abdominal mass, and in some cases with abdominal pain, hypertension, hematuria, and fever." [HPO:curators]
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 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0003251 Male infertility 
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 HP:0008187 Absence of secondary sex characteristics 
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 HP:0008193 Primary gonadal insufficiency 
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 HP:0008214 Decreased serum estradiol 
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 HP:0008230 Decreased testosterone in males 
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 HP:0008232 Elevated follicle stimulating hormone 
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 HP:0008665 Hypertrophic clitoris 
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 HP:0008726 Hypoplastic vagina "Underdevelopment of the vagina." [HPO:curators]
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 HP:0008730 Female external genitalia in males "The presence of female external genitalia in a person with a male karyotype." [HPO:curators]
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 HP:0008734 Decreased testicular size 
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 HP:0010464 Streak ovary "A developmental disorder characterized by the progressive loss of primordial germ cells in the developing ovaries of an embryo, leading to hypoplastic ovaries composed of wavy connective tissue with occasional clumps of granulosa cells, and frequenty mesonephric or hilar cells." [HPO:curators]
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 HP:0011969 Elevated luteinizing hormone "An elevated concentration of luteinizing hormone in the blood." [HPO:probinson]
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 HP:0012244 Abnormal sex determination "Anomaly of primary or secondary sexual development or characteristics." [HPO:probinson, MP:0002210]
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 HP:0012870 Vanishing testis "A condition which is considered to be due to the subsequent atrophy and disappearance in fetal life of an initially normal testis. In the presence of spermatic cord structures is evidence of the presence of the testis in early intrauterine life. When associated with a blind-ending spermatic cord, this entity is named as his absence of a testis in an otherwise normal 46XY male is usually unilateral and is assumed to be a consequence of intrauterine or perinatal torsion or infarction." [HPO:probinson, pmid:22985611]
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 HP:0030680 Abnormality of cardiovascular system morphology "Any structural anomaly of the heart and great vessels." []
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 HP:0100779 Urogenital sinus anomaly "A rare birth defect in women where the urethra and vagina both open into a common channel." [HPO:curators]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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