ENSG00000080503


Homo sapiens

Features
Gene ID: ENSG00000080503
  
Biological name :SMARCA2
  
Synonyms : P51531 / SMARCA2 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 9
Strand: 1
Band: p24.3
Gene start: 1980290
Gene end: 2193624
  
Corresponding Affymetrix probe sets: 206542_s_at (Human Genome U133 Plus 2.0 Array)   206543_at (Human Genome U133 Plus 2.0 Array)   206544_x_at (Human Genome U133 Plus 2.0 Array)   212257_s_at (Human Genome U133 Plus 2.0 Array)   212258_s_at (Human Genome U133 Plus 2.0 Array)   217707_x_at (Human Genome U133 Plus 2.0 Array)   228926_s_at (Human Genome U133 Plus 2.0 Array)   241756_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000489142
Ensembl peptide - ENSP00000489100
Ensembl peptide - ENSP00000489168
Ensembl peptide - ENSP00000492585
Ensembl peptide - ENSP00000490852
Ensembl peptide - ENSP00000490757
Ensembl peptide - ENSP00000490645
Ensembl peptide - ENSP00000490551
Ensembl peptide - ENSP00000490486
Ensembl peptide - ENSP00000490411
Ensembl peptide - ENSP00000490262
Ensembl peptide - ENSP00000489968
Ensembl peptide - ENSP00000489942
Ensembl peptide - ENSP00000489667
Ensembl peptide - ENSP00000489645
Ensembl peptide - ENSP00000489615
Ensembl peptide - ENSP00000489587
Ensembl peptide - ENSP00000489560
Ensembl peptide - ENSP00000489555
Ensembl peptide - ENSP00000489518
Ensembl peptide - ENSP00000489504
Ensembl peptide - ENSP00000489501
Ensembl peptide - ENSP00000489473
Ensembl peptide - ENSP00000489433
Ensembl peptide - ENSP00000489388
Ensembl peptide - ENSP00000489334
Ensembl peptide - ENSP00000489302
Ensembl peptide - ENSP00000489271
Ensembl peptide - ENSP00000489256
Ensembl peptide - ENSP00000489212
Ensembl peptide - ENSP00000489204
Ensembl peptide - ENSP00000265773
Ensembl peptide - ENSP00000305411
Ensembl peptide - ENSP00000324770
Ensembl peptide - ENSP00000349788
Ensembl peptide - ENSP00000371618
Ensembl peptide - ENSP00000371620
Ensembl peptide - ENSP00000371621
Ensembl peptide - ENSP00000371629
Ensembl peptide - ENSP00000371638
Ensembl peptide - ENSP00000387486
Ensembl peptide - ENSP00000392081
Ensembl peptide - ENSP00000401096
Ensembl peptide - ENSP00000409398
Ensembl peptide - ENSP00000412242
Ensembl peptide - ENSP00000413057
Ensembl peptide - ENSP00000415218
Ensembl peptide - ENSP00000488947
NCBI entrez gene - 6595     See in Manteia.
OMIM - 600014
RefSeq - NM_001289398
RefSeq - NM_001289396
RefSeq - NM_001289397
RefSeq - NM_001289399
RefSeq - NM_001289400
RefSeq - NM_003070
RefSeq - NM_139045
RefSeq Peptide - NP_001276326
RefSeq Peptide - NP_001276327
RefSeq Peptide - NP_001276329
RefSeq Peptide - NP_003061
RefSeq Peptide - NP_620614
RefSeq Peptide - NP_001276328
RefSeq Peptide - NP_001276325
swissprot - A0A0U1RRF8
swissprot - A0A0U1RRF5
swissprot - A0A0U1RRD6
swissprot - A0A0U1RR83
swissprot - A0A0U1RR45
swissprot - A0A0U1RR26
swissprot - A0A0U1RR09
swissprot - A0A0U1RQZ9
swissprot - A0A0U1RQX3
swissprot - A0A0U1RQW7
swissprot - A0A0U1RQU0
swissprot - A0A0U1RQS1
swissprot - A0A0U1RQP3
swissprot - A0A0U1RQE1
swissprot - A0A0A0MT03
swissprot - F6RS74
swissprot - F6T8Q0
swissprot - F6UH26
swissprot - F6VDE0
swissprot - F6XE55
swissprot - A0A0A0MSS5
swissprot - P51531
swissprot - B4DNT1
swissprot - B1ALG2
swissprot - B1ALG1
swissprot - B1ALF6
swissprot - A0A1W2PS06
swissprot - A0A1B0GUV6
swissprot - A0A1B0GWA8
swissprot - A0A1B0GU54
swissprot - A0A1B0GTC9
swissprot - A0A0U1RRN2
swissprot - A0A0U1RRJ8
swissprot - A0A0U1RRJ4
swissprot - A0A0U1RRG6
Ensembl - ENSG00000080503
  
Related genetic diseases (OMIM): 601358 - Nicolaides-Baraitser syndrome, 601358
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 smarca2ENSDARG00000008904Danio rerio
 SMARCA2ENSGALG00000010164Gallus gallus
 Smarca2ENSMUSG00000024921Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
P51532 / SMARCA4 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4ENSG0000012761677


Protein motifs (from Interpro)
Interpro ID Name
 IPR000330  SNF2-related, N-terminal domain
 IPR001487  Bromodomain
 IPR001650  Helicase, C-terminal
 IPR006576  BRK domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014012  Helicase/SANT-associated domain
 IPR014978  Glutamine-Leucine-Glutamine, QLQ
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR018359  Bromodomain, conserved site
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR029295  Snf2, ATP coupling domain
 IPR030088  SWI/SNF complex subunit SMARCA2
 IPR036427  Bromodomain-like superfamily
 IPR037259  BRK domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II TAS
 biological_processGO:0006338 chromatin remodeling IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated TAS
 biological_processGO:0006357 regulation of transcription by RNA polymerase II TAS
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007286 spermatid development IEA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0008285 negative regulation of cell proliferation IDA
 biological_processGO:0030308 negative regulation of cell growth IMP
 biological_processGO:0043044 ATP-dependent chromatin remodeling IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IDA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IMP
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II TAS
 cellular_componentGO:0000790 nuclear chromatin IDA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0016514 SWI/SNF complex IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 cellular_componentGO:0045111 intermediate filament cytoskeleton IDA
 cellular_componentGO:0071564 npBAF complex ISS
 cellular_componentGO:0071565 nBAF complex ISS
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003713 transcription coactivator activity TAS
 molecular_functionGO:0004386 helicase activity TAS
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008094 DNA-dependent ATPase activity TAS
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0016817 hydrolase activity, acting on acid anhydrides IEA
 molecular_functionGO:0016887 ATPase activity IEA
 molecular_functionGO:0042393 histone binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IDA


Pathways (from Reactome)
Pathway description
RMTs methylate histone arginines
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000154 Wide mouth "Abnormally wide mouth." [HPO:curators]
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 HP:0000179 Prominent lower lip "Increased thickness of the lower lip, leading to a prominent appearance of the lower lip." [HPO:curators]
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 HP:0000232 Everted lower lip 
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 HP:0000233 Thin vermillion border 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000289 Wide philtrum 
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 HP:0000294 Low frontal hairline "A condition in which the scalp hair is present at lower than usual areas of the forehead." [HPO:curators]
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 HP:0000319 Flat philtrum 
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 HP:0000325 Triangular facies 
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 HP:0000343 Long philtrum 
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 HP:0000446 Narrow nasal bridge 
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000527 Long eyelashes "Mid upper eyelash length >10 mm or increased length of the eyelashes (subjective)." [pmid:19125427]
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 HP:0000581 Blepharophimosis "Reduced width of the palpebral fissures." [HPO:sdoelken]
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 HP:0000687 Widely spaced teeth 
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 HP:0000718 Aggressive behavior "Aggressive behavior can denote verbal aggression, physical aggression against objects, physical aggression against people, and may also include aggression towards oneself." [HPO:curators]
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 HP:0000964 Eczema "Eczema is a form of dermatitis. The term eczema is broadly applied to a range of persistent skin conditions and can be related to a number of underlying conditions. Manifestations of eczema can include dryness and recurring skin rashes with redness, skin edema, itching and dryness, crusting, flaking, blistering, cracking, oozing, or bleeding." [HPO:curators]
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 HP:0001006 Hypotrichosis "Reduced or lacking hair growth." [HPO:curators]
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 HP:0001156 Brachydactyly 
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 HP:0001163 Abnormality of the metacarpal bones 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001328 Learning disability 
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 HP:0001344 Absent speech development 
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 HP:0001373 Joint dislocation "Displacement or malalignment of joints." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001596 Alopecia "Loss of hair from the head or body." [HPO:curators]
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 HP:0001852 Gap between first and second toes "The presence of a larger than normal gap between the first and second toes related to medial displacement of the first toe." [HPO:curators]
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 HP:0002121 Absence seizures "Recurrent absence seizures are `generalized seizures` (HP:0002197) that are characterized by a sudden cessation of motor activity and by a blank facial expression with flickering of the eyelids. There is no convulsive muscular activity or loss of postural control." [HPO:probinson]
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 HP:0002133 Status epilepticus 
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 HP:0002209 Sparse scalp hair "Sparseness of the `head hair` (FMA:54241)." [HPO:probinson]
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 HP:0002223 Absent eyebrows 
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 HP:0002300 Mutism 
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 HP:0002357 Dysphasia 
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 HP:0002381 Aphasia 
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 HP:0002465 Poor speech 
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 HP:0002553 Arched eyebrows 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002705 High, narrow palate "The presence of a high and narrow palate." [HPO:curators]
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 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0003510 Short stature, severe "A severe degree of short stature." [HPO:curators]
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 HP:0004279 Hypoplastic hand 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0005616 Accelerated skeletal maturation "An abnormally increased rate of skeletal maturation. Accelerated skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0005930 Abnormality of the epiphyses 
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 HP:0006237 Prominent interphalangeal joints 
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 HP:0006610 Wide intermamillary distance 
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 HP:0007392 Excessive wrinkled skin 
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 HP:0007665 Curly eyelashes "Abnormally curly or curved eyelashes." [HPO:curators]
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 HP:0007946 Narrow palpebral fissure, unilateral 
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 HP:0009803 Hypoplastic/small phalanges of the hand 
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 HP:0009836 Broad distal phalanges of the hand "Abnormally wide (broad) distal phalanges of the fingers." [HPO:curators]
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 HP:0009928 Ala nasi, thick "Increase in bulk of the ala nasi." [pmid:19152422]
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 HP:0010049 Hypoplastic/short metacarpal bones 
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 HP:0010529 Echolalia "The tendency to repeat vocalizations made by another person." [HPO:curators]
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 HP:0010720 Abnormal hair growth pattern "An abnormality of the distribution of hair growth." [HPO:probinson]
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 HP:0010743 Hypoplasia of the metatarsal bones 
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 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
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 HP:0011097 Epileptic spasms "A sudden flexion, extension or mixed extension-flexion of predominantly proximal and truncal muscles which is usually more sustained than a myoclonic movement but not as sustained as a tonic seizure." [HPO:jalbers]
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 HP:0012745 Short palpebral fissure "Distance between the medial and lateral canthi is more than 2 SD below the mean for age (objective); or, apparently reduced length of the palpebral fissures." [pmid:19125427]
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 HP:0012810 Wide nasal base "Increased distance between the attachments of the alae nasi to the face." [HPO:probinson, pmid:19152422]
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 HP:0030680 Abnormality of cardiovascular system morphology "Any structural anomaly of the heart and great vessels." []
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 HP:0100760 Clubbing of toes "Terminal broadening of the toes (distal phalanges of the toes)." [HPO:sdoelken]
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 HP:0100790 Hernia 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000100462 PRMT5 / O14744 / protein arginine methyltransferase 5  / reaction / complex
 ENSG00000116455 WDR77 / Q9BQA1 / WD repeat domain 77  / complex / reaction
 ENSG00000173473 Q92922 / SMARCC1 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1  / complex
 ENSG00000099956 Q12824 / SMARCB1 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1  / complex
 ENSG00000067955 CBFB / Q13951 / core-binding factor beta subunit  / reaction / complex
 ENSG00000159216 RUNX1 / Q01196 / runt related transcription factor 1  / reaction / complex
 ENSG00000139613 Q8TAQ2 / SMARCC2 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2  / complex






 

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