ENSG00000082684


Homo sapiens

Features
Gene ID: ENSG00000082684
  
Biological name :SEMA5B
  
Synonyms : Q9P283 / SEMA5B / semaphorin 5B
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: -1
Band: q21.1
Gene start: 122909193
Gene end: 123028605
  
Corresponding Affymetrix probe sets: 223610_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000389588
Ensembl peptide - ENSP00000479602
Ensembl peptide - ENSP00000417570
Ensembl peptide - ENSP00000401056
Ensembl peptide - ENSP00000401038
Ensembl peptide - ENSP00000400828
Ensembl peptide - ENSP00000195173
Ensembl peptide - ENSP00000350215
Ensembl peptide - ENSP00000377208
NCBI entrez gene - 54437     See in Manteia.
OMIM - 609298
RefSeq - XM_017006639
RefSeq - NM_001031702
RefSeq - NM_001256346
RefSeq - NM_001256347
RefSeq - NM_001256348
RefSeq - XM_017006638
RefSeq Peptide - NP_001243276
RefSeq Peptide - NP_001243277
RefSeq Peptide - NP_001026872
RefSeq Peptide - NP_001243275
swissprot - F8WAT5
swissprot - H0Y5U2
swissprot - C9JKR3
swissprot - B5ME80
swissprot - C9JTV9
swissprot - Q9P283
swissprot - C9JTX2
Ensembl - ENSG00000082684
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sema5baENSDARG00000061471Danio rerio
 sema5bbENSDARG00000075648Danio rerio
 SEMA5BENSGALG00000011686Gallus gallus
 Q60519ENSMUSG00000052133Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q13591 / SEMA5A / semaphorin 5AENSG0000011290252
Q9H2E6 / SEMA6A / semaphorin 6AENSG0000009242120
Q9H3T3 / SEMA6B / semaphorin 6BENSG0000016768020
Q9H3T2 / SEMA6C / semaphorin 6CENSG0000014343420
Q8NFY4 / SEMA6D / semaphorin 6DENSG0000013787220
O75326 / SEMA7A / semaphorin 7A (John Milton Hagen blood group)ENSG0000013862313


Protein motifs (from Interpro)
Interpro ID Name
 IPR000884  Thrombospondin type-1 (TSP1) repeat
 IPR001627  Sema domain
 IPR002165  Plexin repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR016201  PSI domain
 IPR027231  Semaphorin
 IPR036352  Sema domain superfamily
 IPR036383  Thrombospondin type-1 (TSP1) repeat superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0048675 axon extension IEA
 biological_processGO:0050908 detection of light stimulus involved in visual perception IEA
 biological_processGO:0050919 negative chemotaxis IBA
 biological_processGO:0097485 neuron projection guidance IEA
 biological_processGO:1990138 neuron projection extension IEA
 cellular_componentGO:0005615 extracellular space IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0038191 neuropilin binding IBA


Pathways (from Reactome)
Pathway description
Defective B3GALTL causes Peters-plus syndrome (PpS)
O-glycosylation of TSR domain-containing proteins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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