ENSG00000143434


Homo sapiens

Features
Gene ID: ENSG00000143434
  
Biological name :SEMA6C
  
Synonyms : Q9H3T2 / SEMA6C / semaphorin 6C
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: q21.3
Gene start: 151131685
Gene end: 151146664
  
Corresponding Affymetrix probe sets: 208100_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000357910
Ensembl peptide - ENSP00000357909
Ensembl peptide - ENSP00000482163
Ensembl peptide - ENSP00000483227
Ensembl peptide - ENSP00000344148
Ensembl peptide - ENSP00000357908
NCBI entrez gene - 10500     See in Manteia.
OMIM - 609294
RefSeq - XM_017000082
RefSeq - XM_017000076
RefSeq - XM_017000077
RefSeq - XM_017000078
RefSeq - XM_017000079
RefSeq - XM_017000080
RefSeq - XM_017000081
RefSeq - NM_001178061
RefSeq - NM_001178062
RefSeq - NM_030913
RefSeq - XM_005244835
RefSeq - XM_017000075
RefSeq Peptide - NP_112175
RefSeq Peptide - NP_001171532
RefSeq Peptide - NP_001171533
swissprot - A0A087X0A5
swissprot - Q9H3T2
swissprot - A0A087WYX3
Ensembl - ENSG00000143434
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sema6dENSDARG00000002748Danio rerio
 sema6eENSDARG00000000189Danio rerio
 SEMA6CENSGALG00000045312Gallus gallus
 Q9WTM3ENSMUSG00000038777Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8NFY4 / SEMA6D / semaphorin 6DENSG0000013787241
Q9H2E6 / SEMA6A / semaphorin 6AENSG0000009242137
Q9H3T3 / SEMA6B / semaphorin 6BENSG0000016768035
Q9P283 / SEMA5B / semaphorin 5BENSG0000008268425
Q13591 / SEMA5A / semaphorin 5AENSG0000011290224
O75326 / SEMA7A / semaphorin 7A (John Milton Hagen blood group)ENSG0000013862315


Protein motifs (from Interpro)
Interpro ID Name
 IPR001627  Sema domain
 IPR015514  Semaphorin 6C
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR027231  Semaphorin
 IPR036352  Sema domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0007411 axon guidance IEA
 biological_processGO:0030154 cell differentiation IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr