ENSMUSG00000038777


Mus musculus

Features
Gene ID: ENSMUSG00000038777
  
Biological name :Sema6c
  
Synonyms : Q9WTM3 / Sema6c / sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C
  
Possible biological names infered from orthology : Q9H3T2 / semaphorin 6C
  
Species: Mus musculus
  
Chr. number: 3
Strand: 1
Band: F2.1
Gene start: 95160457
Gene end: 95174024
  
Corresponding Affymetrix probe sets: 10494174 (MoGene1.0st)   1423454_a_at (Mouse Genome 430 2.0 Array)   1437652_at (Mouse Genome 430 2.0 Array)   1451898_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000142525
Ensembl peptide - ENSMUSP00000138154
Ensembl peptide - ENSMUSP00000144039
Ensembl peptide - ENSMUSP00000144702
Ensembl peptide - ENSMUSP00000088331
Ensembl peptide - ENSMUSP00000088333
Ensembl peptide - ENSMUSP00000102835
Ensembl peptide - ENSMUSP00000123457
Ensembl peptide - ENSMUSP00000129081
NCBI entrez gene - 20360     See in Manteia.
MGI - MGI:1338032
RefSeq - XM_006501209
RefSeq - XM_006501198
RefSeq - XM_006501201
RefSeq - XM_006501202
RefSeq - XM_006501204
RefSeq - XM_006501205
RefSeq - XM_006501206
RefSeq - XM_006501207
RefSeq - XM_006501208
RefSeq - NM_001272024
RefSeq - NM_011351
RefSeq - XM_006501192
RefSeq - XM_006501193
RefSeq - XM_006501194
RefSeq - XM_006501195
RefSeq - XM_006501196
RefSeq - XM_006501197
RefSeq Peptide - NP_035481
RefSeq Peptide - NP_001258953
swissprot - E9Q4N1
swissprot - S4R1B4
swissprot - A0A0G2JDV7
swissprot - E9Q613
swissprot - Q9WTM3
swissprot - G5E8N4
Ensembl - ENSMUSG00000038777
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sema6dENSDARG00000002748Danio rerio
 sema6eENSDARG00000000189Danio rerio
 SEMA6CENSGALG00000045312Gallus gallus
 Q9H3T2ENSG00000143434Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q76KF0 / Sema6d / Semaphorin-6D / Q8NFY4*ENSMUSG0000002720041
O35464 / Sema6a / Semaphorin-6A / Q9H2E6*ENSMUSG0000001964736
O54951 / Sema6b / sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B / Q9H3T3* / semaphorin 6B*ENSMUSG0000000122733
Q60519 / Sema5b / Semaphorin-5B / Q9P283*ENSMUSG0000005213325
Sema5a / sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A / Q13591* / semaphorin 5A*ENSMUSG0000002223123
Q9QUR8 / Sema7a / Semaphorin-7A / O75326* / semaphorin 7A (John Milton Hagen blood group)*ENSMUSG0000003826414


Protein motifs (from Interpro)
Interpro ID Name
 IPR001627  Sema domain
 IPR015514  Semaphorin 6C
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR027231  Semaphorin
 IPR036352  Sema domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0007411 axon guidance IEA
 biological_processGO:0030154 cell differentiation IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0030215 semaphorin receptor binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0003998 decreased thermal nociceptive threshold "a lower than average point at which thermal pain sensation is first detectable" [smb:Susan M Bello, Mouse Genome Informatics Curator]
Show

Allelic Composition: Selptm1Bay/Selptm1Bay
Genetic Background: involves: 129S7/SvEvBrd * C57BL/6J

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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