ENSMUSG00000027200


Mus musculus

Features
Gene ID: ENSMUSG00000027200
  
Biological name :Sema6d
  
Synonyms : Q76KF0 / Sema6d / Semaphorin-6D
  
Possible biological names infered from orthology : Q8NFY4
  
Species: Mus musculus
  
Chr. number: 2
Strand: 1
Band: F1
Gene start: 124089969
Gene end: 124667770
  
Corresponding Affymetrix probe sets: 10475544 (MoGene1.0st)   1446536_at (Mouse Genome 430 2.0 Array)   1448060_at (Mouse Genome 430 2.0 Array)   1453055_at (Mouse Genome 430 2.0 Array)   1459318_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000099531
Ensembl peptide - ENSMUSP00000099529
Ensembl peptide - ENSMUSP00000099530
Ensembl peptide - ENSMUSP00000061123
Ensembl peptide - ENSMUSP00000075674
Ensembl peptide - ENSMUSP00000077014
Ensembl peptide - ENSMUSP00000077691
Ensembl peptide - ENSMUSP00000099528
NCBI entrez gene - 214968     See in Manteia.
MGI - MGI:2387661
RefSeq - XM_017317028
RefSeq - NM_001290997
RefSeq - NM_001291000
RefSeq - NM_172537
RefSeq - NM_199238
RefSeq - NM_199239
RefSeq - NM_199240
RefSeq - NM_199241
RefSeq - XM_011239427
RefSeq - XM_017316995
RefSeq - XM_017317001
RefSeq - XM_017317010
RefSeq - XM_017317012
RefSeq - XM_017317014
RefSeq - XM_017317019
RefSeq - XM_017317021
RefSeq - XM_017317026
RefSeq - XM_006499111
RefSeq - XM_006499112
RefSeq - XM_006499113
RefSeq - XM_006499114
RefSeq Peptide - NP_001277926
RefSeq Peptide - NP_001277929
RefSeq Peptide - NP_766125
RefSeq Peptide - NP_954708
RefSeq Peptide - NP_954709
RefSeq Peptide - NP_954710
RefSeq Peptide - NP_954711
swissprot - Q76KF0
swissprot - A2AW73
Ensembl - ENSMUSG00000027200
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sema6dlENSDARG00000011533Danio rerio
 SEMA6DENSGALG00000030542Gallus gallus
 Q8NFY4ENSG00000137872Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
O35464 / Sema6a / Semaphorin-6A / Q9H2E6*ENSMUSG0000001964745
Q9WTM3 / Sema6c / sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C / Q9H3T2* / semaphorin 6C*ENSMUSG0000003877736
O54951 / Sema6b / sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B / Q9H3T3* / semaphorin 6B*ENSMUSG0000000122733
Q60519 / Sema5b / Semaphorin-5B / Q9P283*ENSMUSG0000005213322
Sema5a / sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A / Q13591* / semaphorin 5A*ENSMUSG0000002223121
Q9QUR8 / Sema7a / Semaphorin-7A / O75326* / semaphorin 7A (John Milton Hagen blood group)*ENSMUSG0000003826413


Protein motifs (from Interpro)
Interpro ID Name
 IPR001627  Sema domain
 IPR002165  Plexin repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR027231  Semaphorin
 IPR036352  Sema domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0014911 positive regulation of smooth muscle cell migration IDA
 biological_processGO:0014912 negative regulation of smooth muscle cell migration IDA
 biological_processGO:0021591 ventricular system development IDA
 biological_processGO:0030154 cell differentiation IEA
 cellular_componentGO:0005794 Golgi apparatus ISO
 cellular_componentGO:0005886 plasma membrane ISO
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0030215 semaphorin receptor binding IPI


Pathways (from Reactome)
Pathway description
Other semaphorin interactions


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000030084 P70206 / Plxna1 / Plexin-A1 / Q9UIW2*  / complex / reaction
 ENSMUSG00000023992 Trem2 / Q99NH8 / Triggering receptor expressed on myeloid cells 2 / Q9NZC2*  / complex / reaction
 ENSMUSG00000030579 O54885 / Tyrobp / TYRO protein tyrosine kinase binding protein / O43914*  / reaction / complex






 

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© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr