ENSG00000112902


Homo sapiens

Features
Gene ID: ENSG00000112902
  
Biological name :SEMA5A
  
Synonyms : Q13591 / SEMA5A / semaphorin 5A
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: -1
Band: p15.31
Gene start: 9035026
Gene end: 9546075
  
Corresponding Affymetrix probe sets: 205405_at (Human Genome U133 Plus 2.0 Array)   213169_at (Human Genome U133 Plus 2.0 Array)   229427_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000421961
Ensembl peptide - ENSP00000371936
NCBI entrez gene - 9037     See in Manteia.
OMIM - 609297
RefSeq - XM_017010016
RefSeq - NM_003966
RefSeq - XM_011514156
RefSeq - XM_011514157
RefSeq - XM_011514158
RefSeq - XM_011514159
RefSeq - XM_006714506
RefSeq - XM_006714507
RefSeq - XM_011514155
RefSeq Peptide - NP_003957
swissprot - Q13591
swissprot - X5DR95
swissprot - D6RAF4
Ensembl - ENSG00000112902
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sema5aENSDARG00000058821Danio rerio
 SEMA5AENSGALG00000028685Gallus gallus
 Sema5aENSMUSG00000022231Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9P283 / SEMA5B / semaphorin 5BENSG0000008268458
Q9H2E6 / SEMA6A / semaphorin 6AENSG0000009242123
Q9H3T3 / SEMA6B / semaphorin 6BENSG0000016768022
Q8NFY4 / SEMA6D / semaphorin 6DENSG0000013787221
Q9H3T2 / SEMA6C / semaphorin 6CENSG0000014343421
O75326 / SEMA7A / semaphorin 7A (John Milton Hagen blood group)ENSG0000013862315


Protein motifs (from Interpro)
Interpro ID Name
 IPR000884  Thrombospondin type-1 (TSP1) repeat
 IPR001627  Sema domain
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR016201  PSI domain
 IPR027231  Semaphorin
 IPR036352  Sema domain superfamily
 IPR036383  Thrombospondin type-1 (TSP1) repeat superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001938 positive regulation of endothelial cell proliferation ISS
 biological_processGO:0002043 blood vessel endothelial cell proliferation involved in sprouting angiogenesis ISS
 biological_processGO:0007155 cell adhesion TAS
 biological_processGO:0007162 negative regulation of cell adhesion ISS
 biological_processGO:0007267 cell-cell signaling TAS
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007399 nervous system development TAS
 biological_processGO:0007413 axonal fasciculation ISS
 biological_processGO:0021536 diencephalon development ISS
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0030836 positive regulation of actin filament depolymerization ISS
 biological_processGO:0045766 positive regulation of angiogenesis ISS
 biological_processGO:0048842 positive regulation of axon extension involved in axon guidance ISS
 biological_processGO:0048843 negative regulation of axon extension involved in axon guidance ISS
 biological_processGO:0050918 positive chemotaxis ISS
 biological_processGO:0050919 negative chemotaxis IBA
 biological_processGO:0051897 positive regulation of protein kinase B signaling ISS
 biological_processGO:0060326 cell chemotaxis ISS
 biological_processGO:1990256 signal clustering ISS
 biological_processGO:2000352 negative regulation of endothelial cell apoptotic process ISS
 biological_processGO:2001028 positive regulation of endothelial cell chemotaxis ISS
 cellular_componentGO:0005615 extracellular space IBA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0016020 membrane ISS
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0030215 semaphorin receptor binding ISS
 molecular_functionGO:0035373 chondroitin sulfate proteoglycan binding ISS
 molecular_functionGO:0038191 neuropilin binding IBA
 molecular_functionGO:0043395 heparan sulfate proteoglycan binding ISS
 molecular_functionGO:0045545 syndecan binding ISS


Pathways (from Reactome)
Pathway description
Other semaphorin interactions
Defective B3GALTL causes Peters-plus syndrome (PpS)
O-glycosylation of TSR domain-containing proteins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000023 Inguinal hernia 
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000308 Microretrognathia 
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 HP:0000311 Round face "An unusually round appearance of the face." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000368 Low-set, posteriorly rotated ears 
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 HP:0000384 Preauricular skin tag "A rudimentary tag of ear tissue often containing a core of cartilage and located just in front of the auricle (outer part of the ear)." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000470 Short neck 
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001620 High pitched voice 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002757 Recurrent fractures "The repeated occurence of bone fractures (implying an abnormally increased tendency for fracture)." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004348 Abnormality of bone mineral density "This term applies to all changes in bone mineralisation and or ossification which (depending on severity) can be seen on x-rays as a change in density and or structure of the bone. Changes may affect all bones of the organism, just certain bones or only parts of bones and include decreased mineralisation as may be seen in osteoporosis or increased mineralisation and or ossification as in osteopetrosis, exostoses or any kind of atypic calicfications of different origin and distribution. The overall amount of mineralisation of the bone-organ can be measured as the amount of matter per cubic centimeter of bones, usually measured by densitometry of the lumbar spine or hip. The measurements are usually reported as g/cm3 or as a Z-score (the number of standard deviations above or below the mean for the patient s age and sex). Note that measurement with this method does not reflect local changes in other bones, and as such might not be correct with regard the hole bone-organ." [HPO:curators]
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 HP:0005692 Joint hyperflexibility 
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 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
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 HP:0011344 Severe global developmental delay "A severe delay in the achievement of motor or mental milestones in the domains of development of a child." [DDD:hvfirth]
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 HP:0030680 Abnormality of cardiovascular system morphology "Any structural anomaly of the heart and great vessels." []
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 HP:0200046 Cat cry "The presence of a characteristic high-pitched cry that sounds similar to the meowing of a kitten." [HPO:probinson]
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 HP:0200055 Small hands 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000198753 PLXNB3 / Q9ULL4 / plexin B3  / complex / reaction






 

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