ENSG00000086300


Homo sapiens

Features
Gene ID: ENSG00000086300
  
Biological name :SNX10
  
Synonyms : Q9Y5X0 / SNX10 / sorting nexin 10
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: 1
Band: p15.2
Gene start: 26291895
Gene end: 26374329
  
Corresponding Affymetrix probe sets: 218404_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000387274
Ensembl peptide - ENSP00000386540
Ensembl peptide - ENSP00000393690
Ensembl peptide - ENSP00000478710
Ensembl peptide - ENSP00000408164
Ensembl peptide - ENSP00000395474
Ensembl peptide - ENSP00000343709
Ensembl peptide - ENSP00000379661
NCBI entrez gene - 29887     See in Manteia.
OMIM - 614780
RefSeq - XM_017012088
RefSeq - NM_001199835
RefSeq - NM_001199837
RefSeq - NM_001199838
RefSeq - NM_001318198
RefSeq - NM_001318199
RefSeq - NM_013322
RefSeq - XM_006715712
RefSeq - XM_017012085
RefSeq - XM_017012086
RefSeq - XM_017012087
RefSeq Peptide - NP_001186764
RefSeq Peptide - NP_001186766
RefSeq Peptide - NP_001186767
RefSeq Peptide - NP_001305127
RefSeq Peptide - NP_001305128
RefSeq Peptide - NP_037454
swissprot - Q9Y5X0
swissprot - A0A024RA70
swissprot - C9JUQ6
swissprot - C9JQ16
swissprot - A0A087WUJ3
swissprot - G5E9H5
Ensembl - ENSG00000086300
  
Related genetic diseases (OMIM): 615085 - Osteopetrosis, autosomal recessive 8, 615085
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 A8WG21ENSDARG00000040474Danio rerio
 F1Q506ENSDARG00000004405Danio rerio
 SNX10ENSGALG00000011046Gallus gallus
 Snx10ENSMUSG00000038301Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SNX11 / Q9Y5W9 / sorting nexin 11ENSG0000000291946
SNX12 / Q9UMY4 / sorting nexin 12ENSG0000014716420
SNX3 / O60493 / sorting nexin 3ENSG0000011233520


Protein motifs (from Interpro)
Interpro ID Name
 IPR001683  Phox homologous domain
 IPR036871  PX domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006897 endocytosis IBA
 biological_processGO:0007032 endosome organization IMP
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0030030 cell projection organization IEA
 biological_processGO:0030316 osteoclast differentiation ISS
 biological_processGO:0060271 cilium assembly IMP
 biological_processGO:0061512 protein localization to cilium IMP
 biological_processGO:0071539 protein localization to centrosome IMP
 biological_processGO:1990830 cellular response to leukemia inhibitory factor IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005813 centrosome IDA
 cellular_componentGO:0005815 microtubule organizing center IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0010008 endosome membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0031313 extrinsic component of endosome membrane IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005545 1-phosphatidylinositol binding IMP
 molecular_functionGO:0008289 lipid binding IEA
 molecular_functionGO:0035091 phosphatidylinositol binding IEA
 molecular_functionGO:0051117 ATPase binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000238 Hydrocephalus 
Show

 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
Show

 HP:0000365 Hearing loss 
Show

 HP:0000388 Otitis media 
Show

 HP:0000505 Impaired vision 
Show

 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
Show

 HP:0000648 Optic atrophy 
Show

 HP:0000649 Abnormality of vision evoked potentials 
Show

 HP:0000684 Delayed dentition "Delayed eruption of teeth." [HPO:curators]
Show

 HP:0000772 Abnormality of the ribs 
Show

 HP:0000774 Narrow chest 
Show

 HP:0000944 Abnormality of the metaphyses 
Show

 HP:0000978 Ecchymoses 
Show

 HP:0000980 Pallor 
Show

 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
Show

 HP:0001363 Craniosynostosis "Craniosynostosis refers to the premature closure of the cranial sutures. Primary craniosynostosis refers to the closure of one or more sutures due to abnormalities in skull development, and secondary craniosynostosis results from failure of brain growth." [HPO:curators]
Show

 HP:0001508 Failure to thrive 
Show

 HP:0001510 Growth retardation 
Show

 HP:0001641 Abnormality of the pulmonary valve "An abnormality of the `pulmonary valve` (FMA:7246)." [HPO:probinson]
Show

 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
Show

 HP:0001873 Thrombocytopenia 
Show

 HP:0001903 Anemia 
Show

 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
Show

 HP:0002092 Pulmonary hypertension 
Show

 HP:0002104 Apnea "Lack of breathing with no movement of the respiratory muscles and no exchange of air in the lungs. This term refers to a disposition to have recurrent episodes of apnea rather than to a single event." [HPO:curators]
Show

 HP:0002148 Hypophosphatemia "A lower than normal level of blood phosphate." [HPO:curators]
Show

 HP:0002205 Recurrent respiratory infections 
Show

 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
Show

 HP:0002257 Chronic rhinitis 
Show

 HP:0002653 Bone pain 
Show

 HP:0002716 Lymphadenopathy 
Show

 HP:0002757 Recurrent fractures "The repeated occurence of bone fractures (implying an abnormally increased tendency for fracture)." [HPO:curators]
Show

 HP:0002901 Hypocalcemia "A level of blood calcium that is lower than normal." [HPO:curators]
Show

 HP:0004349 Reduced bone mineral density "A reduction of bone mineral density, that is, of the amount of matter per cubic centimeter of bones." [HPO:curators]
Show

 HP:0004370 Abnormality of temperature regulation 
Show

 HP:0004415 Pulmonary artery stenosis 
Show

 HP:0005930 Abnormality of the epiphyses 
Show

 HP:0006323 Premature deciduous tooth loss 
Show

 HP:0006487 Bowing of the long bones 
Show

 HP:0006824 Cranial nerve paralysis 
Show

 HP:0007807 Optic nerve compression 
Show

 HP:0008066 Abnormal blistering of the skin 
Show

 HP:0010543 Opsoclonus "Spontaneous, non-rhythmic, multi-directional, chaotic movements of the eyes, giving the appearance of agitation. There may be bursts of conjugate movement of the eyes in varying directions and of varying amplitude." [HPO:curators]
Show

 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
Show

 HP:0010719 Abnormality of hair texture "An abnormality of the texture of the `hair` (FMA:53667)." [HPO:probinson]
Show

 HP:0011002 Osteopetrosis 
Show

 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr