ENSDARG00000004405


Danio rerio

Features
Gene ID: ENSDARG00000004405
  
Biological name :snx10a
  
Synonyms : F1Q506 / snx10a / sorting nexin 10a
  
Possible biological names infered from orthology : Q9CWT3 / Q9Y5X0 / SNX10 / sorting nexin 10
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 18118321
Gene end: 18130567
  
Corresponding Affymetrix probe sets: Dr.13606.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000150398
Ensembl peptide - ENSDARP00000025688
Ensembl peptide - ENSDARP00000098673
Ensembl peptide - ENSDARP00000147490
NCBI entrez gene - 403027     See in Manteia.
RefSeq - XM_021468032
RefSeq Peptide - NP_001132934
swissprot - F1Q506
ZFIN ID - ZDB-GENE-050809-44
Ensembl - ENSDARG00000004405
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SNX10ENSGALG00000011046Gallus gallus
 SNX10ENSG00000086300Homo sapiens
 Snx10ENSMUSG00000038301Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
snx10b / A8WG21 / sorting nexin 10b / SNX10* / Q9Y5X0* / Q9CWT3* / sorting nexin 10*ENSDARG0000004047443
snx11 / sorting nexin 11 / Q91WL6* / Q9Y5W9*ENSDARG0000005252238
snx3 / sorting nexin 3 / O60493*ENSDARG0000000867819
snx12 / sorting nexin 12 / Q9UMY4*ENSDARG0000001906018
BX571678.1ENSDARG0000011661316


Protein motifs (from Interpro)
Interpro ID Name
 IPR001683  Phox homologous domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001947 heart looping IMP
 biological_processGO:0006897 endocytosis IBA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016050 vesicle organization IBA
 biological_processGO:0030030 cell projection organization IEA
 biological_processGO:0060271 cilium assembly IMP
 biological_processGO:0061512 protein localization to cilium ISS
 biological_processGO:0070121 Kupffer"s vesicle development IMP
 biological_processGO:0070986 left/right axis specification IMP
 biological_processGO:0071539 protein localization to centrosome ISS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005813 centrosome ISS
 cellular_componentGO:0005815 microtubule organizing center IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0010008 endosome membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0019898 extrinsic component of membrane IBA
 molecular_functionGO:0008289 lipid binding IEA
 molecular_functionGO:0035091 phosphatidylinositol binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000001 Kupffer s vesicle Kupffers vesicle has fewer parts of type epithelial cell cilium, abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased length , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr