ENSDARG00000019060


Danio rerio

Features
Gene ID: ENSDARG00000019060
  
Biological name :snx12
  
Synonyms : snx12 / sorting nexin 12
  
Possible biological names infered from orthology : Q9UMY4
  
Species: Danio rerio
  
Chr. number: 21
Strand: 1
Band:
Gene start: 30470809
Gene end: 30488267
  
Corresponding Affymetrix probe sets: Dr.26393.1.S1_at (Zebrafish Array)   Dr.26393.2.S1_at (Zebrafish Array)   Dr.5299.1.S1_at (Zebrafish Array)   Dr.5299.2.A1_at (Zebrafish Array)   NM_201123_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000106488
Ensembl peptide - ENSDARP00000122910
Ensembl peptide - ENSDARP00000008027
Ensembl peptide - ENSDARP00000134144
Ensembl peptide - ENSDARP00000112873
Ensembl peptide - ENSDARP00000114138
NCBI entrez gene - 394098     See in Manteia.
RefSeq - NM_001145892
RefSeq - NM_201123
RefSeq - XM_005161294
RefSeq Peptide - NP_001139364
RefSeq Peptide - NP_957417
swissprot - Q6TNQ4
swissprot - Q803J1
swissprot - F1RDJ8
swissprot - A2RV07
swissprot - Q6NYP1
ZFIN ID - ZDB-GENE-040426-787
Ensembl - ENSDARG00000019060
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SNX12ENSGALG00000005659Gallus gallus
 SNX12ENSG00000147164Homo sapiens
 Snx12ENSMUSG00000046032Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
snx3 / sorting nexin 3 / O60493*ENSDARG0000000867877
snx10a / F1Q506 / sorting nexin 10a / SNX10* / Q9Y5X0* / sorting nexin 10*ENSDARG0000000440526
snx11 / sorting nexin 11 / Q91WL6* / Q9Y5W9*ENSDARG0000005252226
snx10b / A8WG21 / sorting nexin 10b / SNX10* / Q9Y5X0* / Q9CWT3* / sorting nexin 10*ENSDARG0000004047425
BX571678.1ENSDARG0000011661313


Protein motifs (from Interpro)
Interpro ID Name
 IPR001683  Phox homologous domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006897 endocytosis IBA
 biological_processGO:0016050 vesicle organization IBA
 cellular_componentGO:0005768 endosome IBA
 cellular_componentGO:0019898 extrinsic component of membrane IBA
 molecular_functionGO:0035091 phosphatidylinositol binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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