ENSG00000090006


Homo sapiens

Features
Gene ID: ENSG00000090006
  
Biological name :LTBP4
  
Synonyms : latent transforming growth factor beta binding protein 4 / LTBP4 / Q8N2S1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: 1
Band: q13.2
Gene start: 40592883
Gene end: 40629818
  
Corresponding Affymetrix probe sets: 204442_x_at (Human Genome U133 Plus 2.0 Array)   210628_x_at (Human Genome U133 Plus 2.0 Array)   213176_s_at (Human Genome U133 Plus 2.0 Array)   227989_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000470824
Ensembl peptide - ENSP00000469785
Ensembl peptide - ENSP00000472995
Ensembl peptide - ENSP00000483230
Ensembl peptide - ENSP00000482179
Ensembl peptide - ENSP00000481081
Ensembl peptide - ENSP00000480888
Ensembl peptide - ENSP00000480629
Ensembl peptide - ENSP00000479712
Ensembl peptide - ENSP00000479612
Ensembl peptide - ENSP00000478928
Ensembl peptide - ENSP00000204005
Ensembl peptide - ENSP00000243562
Ensembl peptide - ENSP00000311905
Ensembl peptide - ENSP00000380031
Ensembl peptide - ENSP00000469406
NCBI entrez gene - 8425     See in Manteia.
OMIM - 604710
RefSeq - XM_017027354
RefSeq - NM_001042544
RefSeq - NM_001042545
RefSeq - NM_003573
RefSeq - XM_011527376
RefSeq - XM_011527377
RefSeq - XM_011527378
RefSeq - XM_011527379
RefSeq - XM_011527380
RefSeq - XM_011527381
RefSeq - XM_011527382
RefSeq - XM_011527383
RefSeq - XM_011527384
RefSeq - XM_011527385
RefSeq - XM_011527386
RefSeq - XM_011527387
RefSeq - XM_017027352
RefSeq - XM_017027353
RefSeq Peptide - NP_001036010
RefSeq Peptide - NP_003564
RefSeq Peptide - NP_001036009
swissprot - A0A087WYX7
swissprot - A0A087WXJ2
swissprot - A0A087WXC2
swissprot - A0A087WWZ7
swissprot - A0A087WVV5
swissprot - A0A087WVR1
swissprot - F8WAA0
swissprot - M0QXV3
swissprot - M0QYE9
swissprot - M0QZX0
swissprot - M0R351
swissprot - A0A087WUU1
swissprot - Q8N2S1
swissprot - A0A0C4DH07
swissprot - A0A087X0A7
Ensembl - ENSG00000090006
  
Related genetic diseases (OMIM): 613177 - Cutis laxa, autosomal recessive, type IC, 613177
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 BX663503.3ENSDARG00000099137Danio rerio
 Ltbp4ENSMUSG00000040488Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LTBP2 / Q14767 / latent transforming growth factor beta binding protein 2ENSG0000011968138
LTBP1 / Q14766 / latent transforming growth factor beta binding protein 1ENSG0000004932335
FBN1 / P35555 / fibrillin 1ENSG0000016614729
FBN2 / P35556 / fibrillin 2ENSG0000013882929
FBN3 / Q75N90 / fibrillin 3ENSG0000014244929
LTBP3 / Q9NS15 / latent transforming growth factor beta binding protein 3ENSG0000016805626
FBLN2 / P98095 / fibulin 2ENSG0000016352016
FBLN1 / P23142 / fibulin 1ENSG0000007794211
EFEMP2 / O95967 / EGF containing fibulin extracellular matrix protein 2ENSG000001726387
EFEMP1 / Q12805 / EGF containing fibulin extracellular matrix protein 1ENSG000001153807
FBLN5 / Q9UBX5 / fibulin 5ENSG000001400927


Protein motifs (from Interpro)
Interpro ID Name
 IPR000152  EGF-type aspartate/asparagine hydroxylation site
 IPR000742  EGF-like domain
 IPR001881  EGF-like calcium-binding domain
 IPR009030  Growth factor receptor cysteine-rich domain superfamily
 IPR013032  EGF-like, conserved site
 IPR017878  TB domain
 IPR018097  EGF-like calcium-binding, conserved site
 IPR026823  Complement Clr-like EGF domain
 IPR036773  TGF-beta binding (TB) domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001558 regulation of cell growth TAS
 biological_processGO:0006457 protein folding TAS
 biological_processGO:0007179 transforming growth factor beta receptor signaling pathway IEA
 biological_processGO:0007275 multicellular organism development TAS
 biological_processGO:0017015 regulation of transforming growth factor beta receptor signaling pathway TAS
 biological_processGO:0030162 regulation of proteolysis IDA
 biological_processGO:0030252 growth hormone secretion TAS
 biological_processGO:0045595 regulation of cell differentiation TAS
 biological_processGO:0046879 hormone secretion IEA
 cellular_componentGO:0005576 extracellular region IDA
 cellular_componentGO:0005615 extracellular space IDA
 cellular_componentGO:0031012 extracellular matrix IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005024 transforming growth factor beta-activated receptor activity NAS
 molecular_functionGO:0005178 integrin binding NAS
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005539 glycosaminoglycan binding NAS
 molecular_functionGO:0019838 growth factor binding IEA
 molecular_functionGO:0050431 transforming growth factor beta binding IPI


Pathways (from Reactome)
Pathway description
Molecules associated with elastic fibres


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000015 Bladder diverticula "The presence of one or more diverticula (sac or pouch) in the wall of the urinary bladder." [HPO:curators]
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 HP:0000023 Inguinal hernia 
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 HP:0000126 Hydronephrosis 
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000278 Retrognathia 
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 HP:0000316 Hypertelorism 
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 HP:0000340 Sloping forehead "A form of the forehead that slopes from top to bottom in an anterior direction." [HPO:curators]
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 HP:0000343 Long philtrum 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000750 Impaired language development 
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 HP:0000973 Cutis laxa 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001328 Learning disability 
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 HP:0001371 Contractures 
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 HP:0001388 Joint laxity 
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 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
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 HP:0001601 Laryngomalacia 
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 HP:0001638 Cardiomyopathy 
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 HP:0001655 Patent foramen ovale 
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 HP:0001852 Gap between first and second toes "The presence of a larger than normal gap between the first and second toes related to medial displacement of the first toe." [HPO:curators]
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002021 Pyloric stenosis 
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 HP:0002035 Rectal prolapse 
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 HP:0002089 Pulmonary hypoplasia 
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 HP:0002093 Respiratory insufficiency 
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 HP:0002097 Emphysema 
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 HP:0002515 Waddling gait 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002779 Tracheomalacia 
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 HP:0002780 Bronchomalacia 
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0003323 Muscle weakness, progressive 
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 HP:0003701 Proximal muscle weakness "A lack of strength of the proximal muscles." [HPO:curators]
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 HP:0004415 Pulmonary artery stenosis 
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 HP:0008981 Muscular hypertrophy, esp calf muscles "Muscle hypertrophy primarily affecting the calf muscles." [HPO:curators]
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 HP:0011800 Midface retrusion "Posterior positions and/or vertical shortening of the infraorbital and perialar regions, or increased concavity of the face and/or reduced nasolabial angle." [DDD:jclayton-smith]
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 HP:0100539 Periorbital edema 
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 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000166147 FBN1 / P35555 / fibrillin 1  / complex / reaction
 ENSG00000105329 TGFB1 / P01137 / transforming growth factor beta 1  / reaction / complex






 

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