ENSG00000168056


Homo sapiens

Features
Gene ID: ENSG00000168056
  
Biological name :LTBP3
  
Synonyms : latent transforming growth factor beta binding protein 3 / LTBP3 / Q9NS15
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: -1
Band: q13.1
Gene start: 65538805
Gene end: 65558930
  
Corresponding Affymetrix probe sets: 219922_s_at (Human Genome U133 Plus 2.0 Array)   227308_x_at (Human Genome U133 Plus 2.0 Array)   237144_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000432350
Ensembl peptide - ENSP00000436341
Ensembl peptide - ENSP00000436032
Ensembl peptide - ENSP00000435530
Ensembl peptide - ENSP00000435276
Ensembl peptide - ENSP00000435146
Ensembl peptide - ENSP00000434406
Ensembl peptide - ENSP00000434315
Ensembl peptide - ENSP00000432476
Ensembl peptide - ENSP00000301873
Ensembl peptide - ENSP00000326647
Ensembl peptide - ENSP00000431219
Ensembl peptide - ENSP00000432121
NCBI entrez gene - 4054     See in Manteia.
OMIM - 602090
RefSeq - NM_001164266
RefSeq - NM_021070
RefSeq - NM_001130144
RefSeq - XM_011545032
RefSeq - XM_011545033
RefSeq Peptide - NP_001123616
RefSeq Peptide - NP_001157738
RefSeq Peptide - NP_066548
swissprot - E9PRF2
swissprot - H0YE75
swissprot - Q9NS15
swissprot - H0YCX6
swissprot - E9PR84
swissprot - E9PR75
swissprot - E9PQR0
swissprot - E9PPT7
swissprot - E9PKW1
swissprot - E9PJR2
swissprot - H0YC99
swissprot - H0YCQ2
Ensembl - ENSG00000168056
  
Related genetic diseases (OMIM): 601216 - Dental anomalies and short stature, 601216
  617809 - Geleophysic dysplasia 3, 617809
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 FP102018.1ENSDARG00000035682Danio rerio
 Ltbp3ENSMUSG00000024940Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LTBP1 / Q14766 / latent transforming growth factor beta binding protein 1ENSG0000004932341
LTBP2 / Q14767 / latent transforming growth factor beta binding protein 2ENSG0000011968137
LTBP4 / Q8N2S1 / latent transforming growth factor beta binding protein 4ENSG0000009000633
FBN2 / P35556 / fibrillin 2ENSG0000013882929
FBN3 / Q75N90 / fibrillin 3ENSG0000014244929
FBN1 / P35555 / fibrillin 1ENSG0000016614728
FBLN2 / P98095 / fibulin 2ENSG0000016352018
FBLN1 / P23142 / fibulin 1ENSG0000007794213
EFEMP2 / O95967 / EGF containing fibulin extracellular matrix protein 2ENSG000001726387
EFEMP1 / Q12805 / EGF containing fibulin extracellular matrix protein 1ENSG000001153806
FBLN5 / Q9UBX5 / fibulin 5ENSG000001400926


Protein motifs (from Interpro)
Interpro ID Name
 IPR000152  EGF-type aspartate/asparagine hydroxylation site
 IPR000742  EGF-like domain
 IPR001881  EGF-like calcium-binding domain
 IPR009030  Growth factor receptor cysteine-rich domain superfamily
 IPR013032  EGF-like, conserved site
 IPR017878  TB domain
 IPR018097  EGF-like calcium-binding, conserved site
 IPR026823  Complement Clr-like EGF domain
 IPR036773  TGF-beta binding (TB) domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0036363 transforming growth factor beta activation IMP
 biological_processGO:1902462 positive regulation of mesenchymal stem cell proliferation IMP
 biological_processGO:2000741 positive regulation of mesenchymal stem cell differentiation IMP
 cellular_componentGO:0005576 extracellular region IDA
 cellular_componentGO:0031012 extracellular matrix IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0019838 growth factor binding IEA
 molecular_functionGO:0050431 transforming growth factor beta binding IPI


Pathways (from Reactome)
Pathway description
Molecules associated with elastic fibres


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000160 Microstomia "The presence of an abnormally small `mouth` (FMA:49184)." [HPO:curators]
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 HP:0000179 Prominent lower lip "Increased thickness of the lower lip, leading to a prominent appearance of the lower lip." [HPO:curators]
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 HP:0000303 Mandibular prognathia "Abnormal prominence of the chin related to an abnormally long mandible." [HPO:curators]
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 HP:0000311 Round face "An unusually round appearance of the face." [HPO:curators]
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 HP:0000327 Hypoplasia of the maxilla "Underdevelopment of the `Maxilla` (FMA:9711)." [HPO:probinson]
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 HP:0000343 Long philtrum 
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 HP:0000414 Bulbous nose 
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000527 Long eyelashes "Mid upper eyelash length >10 mm or increased length of the eyelashes (subjective)." [pmid:19125427]
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 HP:0000534 Abnormality of the eyebrow "An abnormality of the `eyebrow` (FMA:54237)." [HPO:probinson]
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 HP:0000677 Oligodontia "The condition of missing over 6 teeth (Missing up to 6 teeth is referred to a hypodontia)." [HPO:curators]
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 HP:0000687 Widely spaced teeth 
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 HP:0000691 Microdontia 
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 HP:0000705 Amelogenesis imperfecta 
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 HP:0000762 Decreased nerve conduction velocities 
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 HP:0000926 Platyspondyly 
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 HP:0000998 Hypertrichosis "Hypertrichosis is increased hair growth that is abnormal in quantity or location." [HPO:curators]
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 HP:0001156 Brachydactyly 
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 HP:0001387 Joint stiffness "Joint stiffness is a perceived sensation of tightness in a joint or joints when attempting to move them after a period of inactivity. Joint stiffness typically subsides over time." [HPO:curators]
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 HP:0001609 Hoarse voice 
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 HP:0001634 Mitral valve prolapse 
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 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0002823 Abnormality of the femur "Abnormality of the femur (i.e., the thigh bone)." [HPO:curators]
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 HP:0002945 Narrow intervertebral spaces 
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 HP:0003196 Nasal hypoplasia "Underdevelopment of the `nose` (FMA:46472)." [HPO:probinson]
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 HP:0003300 Ovoid vertebral bodies 
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 HP:0003510 Short stature, severe "A severe degree of short stature." [HPO:curators]
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 HP:0004279 Hypoplastic hand 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0005900 Fifth metacarpal notched on ulnar side 
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 HP:0005930 Abnormality of the epiphyses 
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 HP:0008441 Herniated intervertebral nuclei 
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 HP:0008450 Narrow vertebral interpedicular distance "A narrowing of the distance between vertebral pedicles, which are the two short, thick processes, which project backward, one on either side, from the upper part of the verterbral body, at the junction of its posterior and lateral surfaces." [HPO:curators]
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 HP:0010049 Hypoplastic/short metacarpal bones 
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 HP:0200055 Small hands 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000105329 TGFB1 / P01137 / transforming growth factor beta 1  / reaction / complex
 ENSG00000119699 TGFB3 / P10600 / transforming growth factor beta 3  / complex / reaction
 ENSG00000092969 TGFB2 / P61812 / transforming growth factor beta 2  / complex / reaction






 

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