ENSG00000119699


Homo sapiens

Features
Gene ID: ENSG00000119699
  
Biological name :TGFB3
  
Synonyms : P10600 / TGFB3 / transforming growth factor beta 3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 14
Strand: -1
Band: q24.3
Gene start: 75958099
Gene end: 75982991
  
Corresponding Affymetrix probe sets: 1555540_at (Human Genome U133 Plus 2.0 Array)   209747_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000238682
Ensembl peptide - ENSP00000451110
NCBI entrez gene - 7043     See in Manteia.
OMIM - 190230
RefSeq - NM_003239
RefSeq Peptide - NP_001316868
RefSeq Peptide - NP_003230
swissprot - A5YM40
swissprot - P10600
Ensembl - ENSG00000119699
  
Related genetic diseases (OMIM): 107970 - Arrhythmogenic right ventricular dysplasia 1, 107970
  615582 - Loeys-Dietz syndrome 5, 615582
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tgfb3ENSDARG00000019367Danio rerio
 TGFB3ENSGALG00000010346Gallus gallus
 Tgfb3ENSMUSG00000021253Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TGFB2 / P61812 / transforming growth factor beta 2ENSG0000009296957
TGFB1 / P01137 / transforming growth factor beta 1ENSG0000010532945
MSTN / O14793 / myostatinENSG0000013837925
GDF11 / O95390 / growth differentiation factor 11ENSG0000013541423
INHBA / P08476 / inhibin beta A subunitENSG0000012264122
INHBE / P58166 / inhibin beta E subunitENSG0000013926920
INHBB / P09529 / inhibin beta B subunitENSG0000016308318
BMP3 / P12645 / bone morphogenetic protein 3ENSG0000015278517
INHBC / P55103 / inhibin beta C subunitENSG0000017518917
NODAL / Q96S42 / nodal growth differentiation factorENSG0000015657417
GDF10 / P55107 / growth differentiation factor 10ENSG0000026652416
GDF1 / P27539 / growth differentiation factor 1ENSG0000013028316
CERS1 / P27544 / ceramide synthase 1ENSG0000022380216
GDF3 / Q9NR23 / growth differentiation factor 3ENSG0000018434415
BMP15 / O95972 / bone morphogenetic protein 15ENSG0000013038514
GDF9 / O60383 / growth differentiation factor 9ENSG0000016440414
GDF15 / Q99988 / growth differentiation factor 15ENSG0000013051312


Protein motifs (from Interpro)
Interpro ID Name
 IPR001111  TGF-beta, propeptide
 IPR001839  Transforming growth factor-beta, C-terminal
 IPR015615  Transforming growth factor-beta-related
 IPR015618  Transforming growth factor beta-3
 IPR016319  Transforming growth factor-beta
 IPR017948  Transforming growth factor beta, conserved site
 IPR029034  Cystine-knot cytokine


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000187 activation of MAPK activity IEA
 biological_processGO:0001666 response to hypoxia IDA
 biological_processGO:0001701 in utero embryonic development ISS
 biological_processGO:0002576 platelet degranulation TAS
 biological_processGO:0007179 transforming growth factor beta receptor signaling pathway IDA
 biological_processGO:0007435 salivary gland morphogenesis IEP
 biological_processGO:0007565 female pregnancy IEA
 biological_processGO:0007568 aging IEA
 biological_processGO:0008156 negative regulation of DNA replication IMP
 biological_processGO:0008285 negative regulation of cell proliferation ISS
 biological_processGO:0010469 regulation of signaling receptor activity IEA
 biological_processGO:0010718 positive regulation of epithelial to mesenchymal transition ISS
 biological_processGO:0010862 positive regulation of pathway-restricted SMAD protein phosphorylation ISS
 biological_processGO:0010936 negative regulation of macrophage cytokine production IDA
 biological_processGO:0016049 cell growth IEA
 biological_processGO:0030501 positive regulation of bone mineralization IEP
 biological_processGO:0030509 BMP signaling pathway IBA
 biological_processGO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway IEA
 biological_processGO:0030879 mammary gland development ISS
 biological_processGO:0032570 response to progesterone IDA
 biological_processGO:0032967 positive regulation of collagen biosynthetic process IMP
 biological_processGO:0034616 response to laminar fluid shear stress IEA
 biological_processGO:0042060 wound healing IEA
 biological_processGO:0042476 odontogenesis NAS
 biological_processGO:0042704 uterine wall breakdown TAS
 biological_processGO:0042981 regulation of apoptotic process IBA
 biological_processGO:0043065 positive regulation of apoptotic process ISS
 biological_processGO:0043408 regulation of MAPK cascade IBA
 biological_processGO:0043524 negative regulation of neuron apoptotic process ISS
 biological_processGO:0043627 response to estrogen IEA
 biological_processGO:0043932 ossification involved in bone remodeling IEP
 biological_processGO:0045216 cell-cell junction organization IDA
 biological_processGO:0045740 positive regulation of DNA replication IMP
 biological_processGO:0045893 positive regulation of transcription, DNA-templated ISS
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II ISS
 biological_processGO:0048286 lung alveolus development ISS
 biological_processGO:0048468 cell development IBA
 biological_processGO:0048565 digestive tract development IEA
 biological_processGO:0048702 embryonic neurocranium morphogenesis IEA
 biological_processGO:0048839 inner ear development IEA
 biological_processGO:0050714 positive regulation of protein secretion IDA
 biological_processGO:0051491 positive regulation of filopodium assembly ISS
 biological_processGO:0051496 positive regulation of stress fiber assembly IDA
 biological_processGO:0051781 positive regulation of cell division IEA
 biological_processGO:0060021 roof of mouth development ISS
 biological_processGO:0060325 face morphogenesis IMP
 biological_processGO:0060364 frontal suture morphogenesis IEA
 biological_processGO:0060391 positive regulation of SMAD protein signal transduction ISS
 biological_processGO:0060395 SMAD protein signal transduction IBA
 biological_processGO:0070483 detection of hypoxia IDA
 biological_processGO:1904706 negative regulation of vascular smooth muscle cell proliferation IDA
 biological_processGO:1905075 positive regulation of occluding junction disassembly IDA
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005615 extracellular space IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005886 plasma membrane IC
 cellular_componentGO:0009986 cell surface IEA
 cellular_componentGO:0030141 secretory granule IEA
 cellular_componentGO:0030315 T-tubule IEA
 cellular_componentGO:0031012 extracellular matrix IDA
 cellular_componentGO:0031093 platelet alpha granule lumen TAS
 cellular_componentGO:0043025 neuronal cell body IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 molecular_functionGO:0005114 type II transforming growth factor beta receptor binding IPI
 molecular_functionGO:0005125 cytokine activity IBA
 molecular_functionGO:0005160 transforming growth factor beta receptor binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008083 growth factor activity IEA
 molecular_functionGO:0034713 type I transforming growth factor beta receptor binding IDA
 molecular_functionGO:0034714 type III transforming growth factor beta receptor binding IMP
 molecular_functionGO:0042802 identical protein binding IDA
 molecular_functionGO:0046982 protein heterodimerization activity IEA
 molecular_functionGO:0050431 transforming growth factor beta binding IDA


Pathways (from Reactome)
Pathway description
Platelet degranulation
Molecules associated with elastic fibres
ECM proteoglycans


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000023 Inguinal hernia 
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 HP:0000098 Increased body height 
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000193 Bifid uvula "A split or cleft uvula." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000248 Brachycephaly "Brachycephaly refers to a short, wide head, which is often caused by premature closure of both coronal sutures." [HPO:curators]
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 HP:0000268 Dolichocephaly 
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 HP:0000276 Long face 
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 HP:0000278 Retrognathia 
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 HP:0000283 Broad face 
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 HP:0000316 Hypertelorism 
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 HP:0000319 Flat philtrum 
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000520 Proptosis 
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 HP:0000525 Abnormality of the iris "An abnormality of the iris, which is the pigmented muscular tissue between the cornea and the lens, that is perforated by an opening called the pupil." [HPO:curators]
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 HP:0000577 Exotropia 
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 HP:0000592 Blue sclerae 
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 HP:0000766 Abnormality of the sternum 
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 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
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 HP:0000768 Pectus carinatum "A deformity of the chest caused by overgrowth of the ribs and characterized by protrusion of the sternum." [HPO:curators]
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0000965 Cutis marmorata 
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 HP:0000978 Ecchymoses 
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 HP:0001166 Arachnodactyly "Abnormally long and slender fingers ("spider fingers")." [HPO:curators]
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 HP:0001265 Hyporeflexia 
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 HP:0001270 Motor retardation 
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 HP:0001319 Neonatal hypotonia "Muscular hypotonia (abnormally low muscle tone) manifesting in the neonatal period." [HPO:curators]
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 HP:0001342 Cerebral hemorrhage "A cerebral hemorrhage (or intracerebral hemorrhage, ICH), is a type of intracranial hemorrhage that occurs within the brain tissue itself." [HPO:curators]
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 HP:0001382 Joint hypermobility "The ability of a joint to move beyond its normal range of motion." [HPO:curators]
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 HP:0001425 Heterogeneous 
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 HP:0001518 Low birth weight 
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001640 Cardiomegaly 
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 HP:0001643 Patent ductus arteriosus 
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 HP:0001645 Sudden cardiac death 
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 HP:0001647 Bicuspid aortic valve "The presence of a bicuspid `aortic valve` (FMA:7236)." [HPO:probinson]
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 HP:0001653 Mitral regurgitation "An `abnormality of the mitral valve` (HP:0001633) characterized by insufficiency or incompetence of the mitral valve resulting in retrograde leaking of blood through the mitral valve upon ventricular contraction." [HPO:probinson]
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 HP:0001655 Patent foramen ovale 
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 HP:0001659 Aortic insufficiency "An insufficiency of the aortic valve, leading to regurgitation (backward flow) of blood from the aorta into the left ventricle." [HPO:curators]
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 HP:0001677 Coronary artery disease 
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0001763 Pes planus "A condition in which the arch of the foot is flat, with the entire sole of the foot being in near-complete contact with the ground." [HPO:curators]
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 HP:0002036 Hiatus hernia "A tendency for the upper part of the stomach to herniate into the thorax because of a weakness of the esophageal hiatus, which is the hole in the diaphragm through which the esophagus passes. Hiatus hernia can be asymptomatic or can lead to acid reflux symptoms (heartburn)." [HPO:curators]
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 HP:0002105 Hemoptysis "Coughing up (expectoration) of blood or blood-streaked sputum from the larynx, trachea, bronchi, or lungs." [HPO:curators]
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 HP:0002107 Pneumothorax 
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 HP:0002138 Subarachnoid hemorrhage 
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 HP:0002140 Ischemic stroke 
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 HP:0002326 Transient ischemic attack 
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 HP:0002616 Aortic root dilatation 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002686 Prenatal maternal abnormality 
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 HP:0002705 High, narrow palate "The presence of a high and narrow palate." [HPO:curators]
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 HP:0002751 Kyphoscoliosis 
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 HP:0002758 Osteoarthritis 
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 HP:0002875 Exertional dyspnea 
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 HP:0003199 Decreased muscle mass 
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 HP:0003302 Spondylolisthesis 
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 HP:0004308 Ventricular arrhythmia 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004933 ascending aortic dissection 
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 HP:0004944 Cerebral aneurysm "The presence of a localized dilatation or ballooning of a cerebral artery." [HPO:curators]
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 HP:0004950 Peripheral arterial disease 
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 HP:0004959 Dilatation of the descending thoracic aorta 
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 HP:0005112 Dilatation of the abdominal aorta 
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 HP:0005162 Impaired left ventricular function 
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 HP:0010646 Cervical spine instability "An abnormal lack of stability of the cervical spine." [HPO:curators]
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 HP:0010665 Bilateral coxa valga "The presence of bilateral `coxa_valga` (HP:0002673)." [HPO:probinson]
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 HP:0011106 Hypovolemia "An decrease in the amount of intravascular fluid, particularly in the volume of the circulating blood." [HPO:probinson]
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 HP:0011663 Arrhythmogenic right ventricular cardiomyopathy "Arrhythmogenic right ventricular cardiomyopathy (ARVC) is defined histologically by the presence of progressive replacement of right ventricular myocardium with adipose and fibrous tissue often confined to a triangle of dysplasia comprising the right ventricular inflow, outflow, and apex. While these pathologic abnormalities can result in functional and morphological right ventricular abnormalities, they also occur in the left ventricle, producing a DCM phenotype, or can be present in the absence of clinically detectable structural changes in either ventricle. For the purposes of this classification, ARVC is defined by the presence of right ventricular dysfunction (global or regional), with or without left ventricular disease, in the presence of histological evidence for the disease and/or electrocardiographic abnormalities in accordance with published criteria." [pmid:17916581]
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 HP:0011800 Midface retrusion "Posterior positions and/or vertical shortening of the infraorbital and perialar regions, or increased concavity of the face and/or reduced nasolabial angle." [DDD:jclayton-smith]
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 HP:0012163 Carotid artery aneurysm "A aneurysm (balooning or bulging out of the vessel wall) of a carotid artery." [HPO:probinson]
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 HP:0012499 Descending aortic dissection "A separation of the layers within the wall of the `descending aorta` (FMA:3784). Tears in the intimal layer result in the propagation of dissection (proximally or distally) secondary to blood entering the intima-media space." [HPO:probinson]
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 HP:0012763 Paroxysmal dyspnea "A sudden attack of dyspnea that occurs while the affected person is at rest." [HPO:probinson]
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 HP:0012771 Increased arm span "Decreased length of the arm span (length from one end of an individual s arms (measured at the fingertips) to the other when raised parallel to the ground at shoulder height at a one-hundred eighty degree angle." [HPO:probinson]
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 HP:0100749 Chest pain 
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 HP:0100775 Dural ectasia "A widening or ballooning of the dural sac surrounding the spinal cord usually at the lumbosacral level." [HPO:sdoelken]
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 HP:0200146 Cystic medial necrosis of the aorta 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000122176 FMOD / Q06828 / fibromodulin  / complex / reaction
 ENSG00000182492 BGN / P21810 / biglycan  / reaction / complex
 ENSG00000049323 LTBP1 / Q14766 / latent transforming growth factor beta binding protein 1  / complex / reaction
 ENSG00000168056 LTBP3 / Q9NS15 / latent transforming growth factor beta binding protein 3  / reaction / complex
 ENSG00000011465 DCN / P07585 / decorin  / complex / reaction
 ENSG00000119699 TGFB3 / P10600 / transforming growth factor beta 3  / complex






 

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