ENSG00000182492


Homo sapiens

Features
Gene ID: ENSG00000182492
  
Biological name :BGN
  
Synonyms : BGN / biglycan / P21810
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: 1
Band: q28
Gene start: 153494939
Gene end: 153509554
  
Corresponding Affymetrix probe sets: 201261_x_at (Human Genome U133 Plus 2.0 Array)   201262_s_at (Human Genome U133 Plus 2.0 Array)   213905_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000327336
Ensembl peptide - ENSP00000402525
NCBI entrez gene - 633     See in Manteia.
OMIM - 301870
RefSeq - NM_001711
RefSeq - XM_017029724
RefSeq Peptide - NP_001702
swissprot - C9JKG1
swissprot - P21810
Ensembl - ENSG00000182492
  
Related genetic diseases (OMIM): 300106 - Spondyloepimetaphyseal dysplasia, X-linked, 300106
  300989 - Meester-Loeys syndrome, 300989
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 bgnaENSDARG00000017884Danio rerio
 bgnbENSDARG00000002945Danio rerio
 BgnENSMUSG00000031375Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
DCN / P07585 / decorinENSG0000001146555
ASPN / Q9BXN1 / asporinENSG0000010681954
LUM / P51884 / lumicanENSG0000013932927
PRELP / P51888 / proline and arginine rich end leucine rich repeat proteinENSG0000018878326
ECM2 / O94769 / extracellular matrix protein 2ENSG0000010682326
FMOD / Q06828 / fibromodulinENSG0000012217625
PODN / Q7Z5L7 / podocanENSG0000017434824
OMD / Q99983 / osteomodulinENSG0000012708324
PODNL1 / Q6PEZ8 / podocan like 1ENSG0000013200024
KERA / O60938 / keratocanENSG0000013933024


Protein motifs (from Interpro)
Interpro ID Name
 IPR000372  Leucine-rich repeat N-terminal domain
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR016352  Small leucine-rich proteoglycan, class I, decorin/asporin/byglycan
 IPR028547  Biglycan
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001974 blood vessel remodeling IEA
 biological_processGO:0006469 negative regulation of protein kinase activity IBA
 biological_processGO:0008150 biological_process ND
 biological_processGO:0019221 cytokine-mediated signaling pathway IBA
 biological_processGO:0019800 peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan IEA
 biological_processGO:0030198 extracellular matrix organization TAS
 biological_processGO:0030203 glycosaminoglycan metabolic process TAS
 biological_processGO:0030206 chondroitin sulfate biosynthetic process TAS
 biological_processGO:0030207 chondroitin sulfate catabolic process TAS
 biological_processGO:0030208 dermatan sulfate biosynthetic process TAS
 biological_processGO:0046426 negative regulation of JAK-STAT cascade IBA
 cellular_componentGO:0005576 extracellular region IDA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0005796 Golgi lumen TAS
 cellular_componentGO:0009986 cell surface IDA
 cellular_componentGO:0030133 transport vesicle IDA
 cellular_componentGO:0031012 extracellular matrix ISS
 cellular_componentGO:0042383 sarcolemma IEA
 cellular_componentGO:0043202 lysosomal lumen TAS
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0004860 protein kinase inhibitor activity IBA
 molecular_functionGO:0005201 extracellular matrix structural constituent NAS
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0005539 glycosaminoglycan binding IEA
 molecular_functionGO:0050840 extracellular matrix binding IEA


Pathways (from Reactome)
Pathway description
A tetrasaccharide linker sequence is required for GAG synthesis
Chondroitin sulfate biosynthesis
Dermatan sulfate biosynthesis
CS/DS degradation
ECM proteoglycans
Defective B4GALT7 causes EDS, progeroid type
Defective B3GAT3 causes JDSSDHD
Defective CHST3 causes SEDCJD
Defective CHST14 causes EDS, musculocontractural type
Defective CHSY1 causes TPBS
Defective B3GALT6 causes EDSP2 and SEMDJL1


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000193 Bifid uvula "A split or cleft uvula." [HPO:curators]
Show

 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000327 Hypoplasia of the maxilla "Underdevelopment of the `Maxilla` (FMA:9711)." [HPO:probinson]
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000520 Proptosis 
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 HP:0000768 Pectus carinatum "A deformity of the chest caused by overgrowth of the ribs and characterized by protrusion of the sternum." [HPO:curators]
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 HP:0000894 Short clavicles 
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 HP:0000922 Posterior rib cupping 
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 HP:0000926 Platyspondyly 
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 HP:0001156 Brachydactyly 
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 HP:0001216 Delayed maturation/delayed ossification of carpal bones 
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 HP:0001230 Broad metacarpals 
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 HP:0001373 Joint dislocation "Displacement or malalignment of joints." [HPO:curators]
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 HP:0001377 Limited elbow extension 
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 HP:0001382 Joint hypermobility "The ability of a joint to move beyond its normal range of motion." [HPO:curators]
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 HP:0001417 X-linked inheritance "A mode of inheritance that is observed for traits related to a gene encoded on the X chromosome." [HPO:curators]
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 HP:0001419 X-linked recessive inheritance "A mode of inheritance that is observed for recessive traits related to a gene encoded on the X chromosome. In the context of medical genetics, X-linked recessive disorders manifest in males (who have one copy of the X chromosome and are thus hemizygotes), but generally not in female heterozygotes who have one mutant and one normal allele." [HPO:curators]
Show

 HP:0001653 Mitral regurgitation "An `abnormality of the mitral valve` (HP:0001633) characterized by insufficiency or incompetence of the mitral valve resulting in retrograde leaking of blood through the mitral valve upon ventricular contraction." [HPO:probinson]
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 HP:0001763 Pes planus "A condition in which the arch of the foot is flat, with the entire sole of the foot being in near-complete contact with the ground." [HPO:curators]
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 HP:0001773 Short, broad feet "Abnormally short and wide feet." [HPO:curators]
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002119 Ventriculomegaly 
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 HP:0002647 Aortic dissection "Aortic dissection refers to a tear in the intimal layer of the aorta causing a separation between the intima and the medial layers of the aorta." [HPO:curators]
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 HP:0002651 Spondyloepimetaphyseal dysplasia 
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 HP:0002673 Coxa valga "Coxa valga is a deformity of the hip in which the angle between the femoral shaft and the femoral neck is increased compared to age-adjusted values (about 150 degrees in newborns gradually reducing to 120-130 degrees in adults)." [HPO:curators]
Show

 HP:0002808 Kyphosis 
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 HP:0002869 Flared iliac wings 
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 HP:0002938 Lumbar hyperlordosis 
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 HP:0003025 Irregular metaphyses 
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 HP:0003026 Short long bones 
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 HP:0003085 Disproportionately long fibulae 
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 HP:0003180 Flat acetabular roofs 
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 HP:0003275 Narrow pelvis 
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 HP:0003311 Hypoplastic odontoid process 
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 HP:0003521 Short stature, disproportionate (short trunk) 
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 HP:0003988 Long ulna 
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 HP:0004000 Chevron-shaped/cone-shaped radial epiphyses 
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 HP:0004279 Hypoplastic hand 
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 HP:0004482 Relative macrocephaly "A relatively mild degree of macrocephaly in which the head circumference is not above two standard deviations from the mean, but appears dysproportionately large when other factors such as body stature are taken into account." [HPO:curators]
Show

 HP:0004573 wedge-shaped 11th or 12th thoracic vertebrae 
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 HP:0004937 pulmonary artery aneurysm 
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 HP:0004944 Cerebral aneurysm "The presence of a localized dilatation or ballooning of a cerebral artery." [HPO:curators]
Show

 HP:0004981 prominent ulnar styloid process 
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 HP:0005066 cone-shaped epiphyses fused within their metaphyses 
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 HP:0006009 Widened phalanges 
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 HP:0006059 Cone-shaped metacarpal epiphyses "A cone-shaped appearance of the epiphyses of the metacarpal bones, producing a ball-in-a-socket appearance. This epiphyses are located at the distal ends of the metacarpal bones." [HPO:curators]
Show

 HP:0006371 Short, broad long bone diaphyses 
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 HP:0009486 Radial deviation of the hand "An abnormal position of the hand in which the wrist is bent toward the radius (i.e., toward the thumb)." [HPO:curators]
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 HP:0009803 Hypoplastic/small phalanges of the hand 
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 HP:0010049 Hypoplastic/short metacarpal bones 
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 HP:0010230 Cone-shaped epiphyses of the phalanges of the hand "A cone-shaped appearance of the epiphyses of the fingers of the hand, producing a ball-in-a-socket appearance. The related entity angel-shaped epiphysis refers to a pronounced cone-shaped epiphysis in combination with a pseudoepiphysis at the distal end of a phalanx." [HPO:curators]
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 HP:0010646 Cervical spine instability "An abnormal lack of stability of the cervical spine." [HPO:curators]
Show

 HP:0011940 Anterior wedging of T12 "An abnormality of the shape of the thoracic vertebra T12 such that it is wedge-shaped (narrow towards the front)." [HPO:probinson]
Show

 HP:0012385 Camptodactyly "The distal interphalangeal joint and/or the proximal interphalangeal joint of the fingers or toes cannot be extended to 180 degrees by either active or passive extension." [HPO:probinson]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000105329 TGFB1 / P01137 / transforming growth factor beta 1  / reaction / complex
 ENSG00000119699 TGFB3 / P10600 / transforming growth factor beta 3  / complex / reaction
 ENSG00000092969 TGFB2 / P61812 / transforming growth factor beta 2  / complex / reaction






 

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