ENSG00000184344


Homo sapiens

Features
Gene ID: ENSG00000184344
  
Biological name :GDF3
  
Synonyms : GDF3 / growth differentiation factor 3 / Q9NR23
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: -1
Band: p13.31
Gene start: 7689782
Gene end: 7695776
  
Corresponding Affymetrix probe sets: 220053_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000331745
NCBI entrez gene - 9573     See in Manteia.
OMIM - 606522
RefSeq - NM_020634
RefSeq Peptide - NP_065685
swissprot - Q9NR23
Ensembl - ENSG00000184344
  
Related genetic diseases (OMIM): 613702 - Klippel-Feil syndrome 3, autosomal dominant, 613702
  613703 - Microphthalmia with coloboma 6, 613703
  613704 - Microphthalmia, isolated 7, 613704
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gdf3ENSDARG00000037995Danio rerio
 GDF3ENSGALG00000003161Gallus gallus
 Gdf3ENSMUSG00000030117Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
GDF1 / P27539 / growth differentiation factor 1ENSG0000013028336
CERS1 / P27544 / ceramide synthase 1ENSG0000022380236
GDF10 / P55107 / growth differentiation factor 10ENSG0000026652423
NODAL / Q96S42 / nodal growth differentiation factorENSG0000015657423
BMP3 / P12645 / bone morphogenetic protein 3ENSG0000015278522
INHBB / P09529 / inhibin beta B subunitENSG0000016308321
INHBA / P08476 / inhibin beta A subunitENSG0000012264121
MSTN / O14793 / myostatinENSG0000013837921
INHBE / P58166 / inhibin beta E subunitENSG0000013926920
INHBC / P55103 / inhibin beta C subunitENSG0000017518919
TGFB1 / P01137 / transforming growth factor beta 1ENSG0000010532919
GDF11 / O95390 / growth differentiation factor 11ENSG0000013541418
TGFB2 / P61812 / transforming growth factor beta 2ENSG0000009296918
BMP15 / O95972 / bone morphogenetic protein 15ENSG0000013038518
TGFB3 / P10600 / transforming growth factor beta 3ENSG0000011969917
GDF15 / Q99988 / growth differentiation factor 15ENSG0000013051316
GDF9 / O60383 / growth differentiation factor 9ENSG0000016440416


Protein motifs (from Interpro)
Interpro ID Name
 IPR001111  TGF-beta, propeptide
 IPR001839  Transforming growth factor-beta, C-terminal
 IPR015615  Transforming growth factor-beta-related
 IPR017948  Transforming growth factor beta, conserved site
 IPR029034  Cystine-knot cytokine


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001501 skeletal system development IMP
 biological_processGO:0001654 eye development IMP
 biological_processGO:0001701 in utero embryonic development IEA
 biological_processGO:0002021 response to dietary excess IEA
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007492 endoderm development IEA
 biological_processGO:0007498 mesoderm development IEA
 biological_processGO:0010453 regulation of cell fate commitment IDA
 biological_processGO:0010469 regulation of signaling receptor activity IEA
 biological_processGO:0010862 positive regulation of pathway-restricted SMAD protein phosphorylation IBA
 biological_processGO:0030514 negative regulation of BMP signaling pathway IDA
 biological_processGO:0030903 notochord development IEA
 biological_processGO:0032525 somite rostral/caudal axis specification IEA
 biological_processGO:0042981 regulation of apoptotic process IBA
 biological_processGO:0043408 regulation of MAPK cascade IBA
 biological_processGO:0045600 positive regulation of fat cell differentiation IEA
 biological_processGO:0045605 negative regulation of epidermal cell differentiation IDA
 biological_processGO:0045662 negative regulation of myoblast differentiation IEA
 biological_processGO:0048468 cell development IBA
 biological_processGO:0048859 formation of anatomical boundary IEA
 biological_processGO:0060395 SMAD protein signal transduction IBA
 biological_processGO:0090009 primitive streak formation IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005615 extracellular space IBA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0005125 cytokine activity IBA
 molecular_functionGO:0005160 transforming growth factor beta receptor binding IBA
 molecular_functionGO:0008083 growth factor activity IEA
 molecular_functionGO:0019901 protein kinase binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000324 Facial asymmetry 
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 HP:0000365 Hearing loss 
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 HP:0000465 Webbed neck 
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 HP:0000470 Short neck 
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 HP:0000505 Impaired vision 
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 HP:0000567 Chorioretinal coloboma 
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000589 Coloboma "A developmental defect characterized by a cleft of some portion of the `eye` (FMA:54448`) or ocular adnexa." [HPO:probinson]
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 HP:0000612 Iris coloboma "A `coloboma` (HP:0000589) of the `iris` (FMA:58235)." [HPO:probinson]
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000772 Abnormality of the ribs 
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 HP:0000912 Sprengel anomaly "A complex deformity characterized by congenital elevation of the scapula." [HPO:curators]
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 HP:0001291 Abnormality of the cranial nerves "Abnormality affecting one or more of the cranial nerves, which emerge directly from the brain stem." [HPO:curators.]
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0002023 Anal atresia "Congenital absence of the anus, i.e., the opening at the bottom end of the intestinal tract." [HPO:curators]
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 HP:0002162 Low posterior hairline 
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 HP:0002414 Spina bifida "Incomplete closure of the embryonic neural tube, whereby some vertebral arches remain unfused and open." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002943 Thoracic scoliosis 
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 HP:0003043 Abnormality of the shoulder "An abnormality of the shoulder, which is defined as the structures surrounding the shoulder joint where the humerus attaches to the scapula." [HPO:curators]
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 HP:0004374 Hemiplegia/hemiparesis "Loss of strength in the arm, leg, and sometimes face on one side of the body. Hemiplegia refers to a severe or complete loss of strength, whereas hemiparesis refers to a relatively mild loss of strength." [HPO:curators]
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 HP:0004397 Ectopic anus "Abnormal displacement or malposition of the anus." [HPO:curators]
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 HP:0004602 cervical vertebral fusion, c2-c3 "Fusion of cervical vertebrae, most common of the vertebrae C2 and C3, caused by a failure in the normal segmentation or division of the cervical vertebrae during the early weeks of fetal development, leading to a short neck with a low hairline at the back of the head, and restricted mobility of the upper spine." [HPO:curators]
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 HP:0004635 cervical vertebrae fusion, usually at c5 to c6 
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 HP:0005107 Abnormality of the sacrum 
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 HP:0005640 Abnormal vertebral segmentation and fusion 
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 HP:0005988 Torticollis, congenital 
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 HP:0007633 Bilateral microphthalmos "A developmental anomaly characterized by abnormal smallness of both eyes." [HPO:curators]
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 HP:0007750 Foveal hypoplasia 
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 HP:0007766 Hypoplastic optic disks 
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 HP:0008678 Renal hypoplasia/aplasia 
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 HP:0009911 Abnormality of the temporal bone "Abnormality of the temporal bone of the skull, which is situated at the sides and base of the skull roughly underlying the region of the face known as the temple." [HPO:curators]
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 HP:0010984 Digenic inheritance "A type of multifactorial inheritance governed by the simultaneous action of two gene loci." [HPO:probinson, ISBN:978-0192628961]
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 HP:0030281 Cervical vertebral fusion (C3/C4) "Fusion of cervical vertebrae at C3 and C4, caused by a failure in the normal segmentation or division of the cervical vertebrae during the early weeks of fetal development." []
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 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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