ENSG00000172638


Homo sapiens

Features
Gene ID: ENSG00000172638
  
Biological name :EFEMP2
  
Synonyms : EFEMP2 / EGF containing fibulin extracellular matrix protein 2 / O95967
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: -1
Band: q13.1
Gene start: 65866441
Gene end: 65873592
  
Corresponding Affymetrix probe sets: 206580_s_at (Human Genome U133 Plus 2.0 Array)   209356_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000434151
Ensembl peptide - ENSP00000437238
Ensembl peptide - ENSP00000436536
Ensembl peptide - ENSP00000436526
Ensembl peptide - ENSP00000436521
Ensembl peptide - ENSP00000435963
Ensembl peptide - ENSP00000435823
Ensembl peptide - ENSP00000435419
Ensembl peptide - ENSP00000435295
Ensembl peptide - ENSP00000309953
Ensembl peptide - ENSP00000431305
Ensembl peptide - ENSP00000432191
NCBI entrez gene - 30008     See in Manteia.
OMIM - 604633
RefSeq - NM_016938
RefSeq Peptide - NP_058634
swissprot - E9PNB8
swissprot - E9PKA3
swissprot - E9PI47
swissprot - A0A024R5G1
swissprot - H0YCB5
swissprot - H0YCR9
swissprot - H0YET5
swissprot - H0YEU0
swissprot - E9PSC1
swissprot - O95967
swissprot - E9PRU1
swissprot - E9PRQ8
Ensembl - ENSG00000172638
  
Related genetic diseases (OMIM): 614437 - Cutis laxa, autosomal recessive, type IB, 614437
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 efemp2aENSDARG00000094324Danio rerio
 efemp2bENSDARG00000020811Danio rerio
 Efemp2ENSMUSG00000024909Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
EFEMP1 / Q12805 / EGF containing fibulin extracellular matrix protein 1ENSG0000011538054
FBLN5 / Q9UBX5 / fibulin 5ENSG0000014009249
FBLN2 / P98095 / fibulin 2ENSG0000016352036
FBLN1 / P23142 / fibulin 1ENSG0000007794235
LTBP2 / Q14767 / latent transforming growth factor beta binding protein 2ENSG0000011968127
FBN1 / P35555 / fibrillin 1ENSG0000016614726
FBN3 / Q75N90 / fibrillin 3ENSG0000014244926
LTBP4 / Q8N2S1 / latent transforming growth factor beta binding protein 4ENSG0000009000625
FBN2 / P35556 / fibrillin 2ENSG0000013882925
LTBP1 / Q14766 / latent transforming growth factor beta binding protein 1ENSG0000004932324
LTBP3 / Q9NS15 / latent transforming growth factor beta binding protein 3ENSG0000016805619


Protein motifs (from Interpro)
Interpro ID Name
 IPR000152  EGF-type aspartate/asparagine hydroxylation site
 IPR000742  EGF-like domain
 IPR001881  EGF-like calcium-binding domain
 IPR009030  Growth factor receptor cysteine-rich domain superfamily
 IPR013032  EGF-like, conserved site
 IPR018097  EGF-like calcium-binding, conserved site
 IPR026823  Complement Clr-like EGF domain
 IPR026824  EGF-containing fibulin-like extracellular matrix protein 2
 IPR037287  Fibulin 3/4/5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0048251 elastic fiber assembly IEA
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005604 basement membrane TAS
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 cellular_componentGO:1903561 extracellular vesicle HDA
 molecular_functionGO:0005201 extracellular matrix structural constituent TAS
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Molecules associated with elastic fibres


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000010 Recurrent urinary tract infections "Repeated infections of the urinary tract." [HPO:curators]
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 HP:0000015 Bladder diverticula "The presence of one or more diverticula (sac or pouch) in the wall of the urinary bladder." [HPO:curators]
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 HP:0000023 Inguinal hernia 
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 HP:0000076 Vesicoureteral reflux "Abnormal (retrograde) movement of urine from the bladder into ureters or kidneys related to inadequacy of the valvular mechanism at the ureterovesicular junction or other causes." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000270 Delayed closure of fontanelles "Infants normally have two fontanels at birth, the diamond-shaped anterior fontanelle at the junction of the coronal and sagittal sutures, and the posterior fontanelle at the intersection of the occipital and parietal bones. The posterior fontanelle usually closes by the 8th week of life, and the anterior fontanel closes by the 18th month of life on average. This term applies if there is delay of closure of the fontanelles beyond the normal age." [HPO:curators]
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 HP:0000293 Full cheeks 
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 HP:0000316 Hypertelorism 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000377 Abnormal form of ears "Abnormal form of the out part of the ear (also referred to as the auricle or pinna)." [HPO:curators]
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 HP:0000414 Bulbous nose 
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 HP:0000444 Beaked nose 
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000520 Proptosis 
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 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
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 HP:0000776 Diaphragmatic hernia "Diaphragmatic hernia is the result of a developmental defect causing an abnormal opening in the diaphragm, through which abdominal organs (stomach, spleen, liver, and intestines) can protrude into the thoracic cavity. This usually causes respiratory distress in the newborn period." [HPO:curators]
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 HP:0000821 Hypothyroidism 
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 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
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 HP:0000973 Cutis laxa 
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 HP:0000977 Soft skin 
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 HP:0001166 Arachnodactyly "Abnormally long and slender fingers ("spider fingers")." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001382 Joint hypermobility "The ability of a joint to move beyond its normal range of motion." [HPO:curators]
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 HP:0001548 Overgrowth 
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 HP:0001562 Oligohydramnios 
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 HP:0001582 Loose, redundant skin 
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 HP:0001635 Congestive heart failure "The presence of an abnormality of cardiac function that is responsible for the failure of the heart to pump blood at a rate that is commensurate with the needs of the tissues or a state in which abnormally elevated filling pressures are required for the heart to do so. Heart failure is frequently related to a defect in myocardial contraction." [HPO:curators]
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 HP:0001642 Pulmonic stenosis "A narrowing of the right ventricular outflow tract that can occur at the pulmonary valve (valvular stenosis) or just below the pulmonary valve (infundibular stenosis). Infundibular pulmonic stenosis is mostly caused by overgrowth of the heart muscle wall (hypertrophy of the septoparietal trabeculae). Pulmonic stenosis is often seen as a part of Fallot s tetralogy, in which case the events leading to the formation of the overriding aorta are also believed to be a cause of the pulmonic stenosis. The pulmonic stenosis is the major cause of the malformations seen in patients with Fallot tetralogy, with the other associated malformations acting as compensatory mechanisms to the pulmonic stenosis. The degree of stenosis varies between individuals with TOF, and is the primary determinant of symptoms and severity. This malformation is infrequently described as sub-pulmonary stenosis or subpulmonary obstruction." [HPO:curators]
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 HP:0001662 Bradycardia 
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 HP:0002097 Emphysema 
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 HP:0002098 Respiratory distress 
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 HP:0002595 Ileus "Acute obstruction of the intestines preventing passage of the contents of the intestines." [HPO:sdoelken]
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 HP:0002645 Wormian bones 
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 HP:0002757 Recurrent fractures "The repeated occurence of bone fractures (implying an abnormally increased tendency for fracture)." [HPO:curators]
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 HP:0004937 pulmonary artery aneurysm 
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 HP:0004942 Aortic aneurysms 
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 HP:0004955 Arterial tortuosity, generalized 
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 HP:0005222 Bowel diverticula 
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0005313 Arterial fibromuscular dysplasia 
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 HP:0005692 Joint hyperflexibility 
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 HP:0010444 Pulmonary insufficiency "The retrograde (backwards) flow of blood through the pulmonary valve into the right ventricle during diastole." [HPO:curators]
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 HP:0010759 Prominent premaxilla "Prominent aspect of the `premaxilla` (FMA:76869)." [HPO:sdoelken]
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 HP:0011220 Prominent forehead "Forward prominence of the entire forehead, due to protrusion of the frontal bone." [pmid:19125436]
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 HP:0011675 Arrhythmia "Any cardiac rhythm other than the normal sinus rhythm. Such a rhythm may be either of sinus or ectopic origin and either regular or irregular. An arrhythmia may be due to a disturbance in impulse formation or conduction or both." [DDD:dbrown, pmid:19063792]
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 HP:0045025 Small palpebral fissure 
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 HP:0100545 Arterial stenosis 
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 HP:0100678 Wrinkled skin 
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 HP:0100750 Atelectasis 
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 HP:0100877 Renal diverticulum "Cystic, urine-containing intrarenal cavities lined with transitional cell epithelium that communicate through a narrow channel with the collecting system." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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