ENSG00000095970


Homo sapiens

Features
Gene ID: ENSG00000095970
  
Biological name :TREM2
  
Synonyms : Q9NZC2 / TREM2 / triggering receptor expressed on myeloid cells 2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: -1
Band: p21.1
Gene start: 41158506
Gene end: 41163186
  
Corresponding Affymetrix probe sets: 219725_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000342651
Ensembl peptide - ENSP00000362205
Ensembl peptide - ENSP00000362214
NCBI entrez gene - 54209     See in Manteia.
OMIM - 605086
RefSeq - XM_006715116
RefSeq - NM_001271821
RefSeq - NM_018965
RefSeq Peptide - NP_061838
RefSeq Peptide - NP_001258750
swissprot - Q5TCX1
swissprot - Q9NZC2
Ensembl - ENSG00000095970
  
Related genetic diseases (OMIM): 221770 - Nasu-Hakola disease, 221770
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TREM2ENSGALG00000023781Gallus gallus
 Trem2ENSMUSG00000023992Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR013106  Immunoglobulin V-set domain
 IPR013783  Immunoglobulin-like fold
 IPR036179  Immunoglobulin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002588 positive regulation of antigen processing and presentation of peptide antigen via MHC class II IDA
 biological_processGO:0006911 phagocytosis, engulfment IEA
 biological_processGO:0006959 humoral immune response TAS
 biological_processGO:0032497 detection of lipopolysaccharide IEA
 biological_processGO:0032499 detection of peptidoglycan IEA
 biological_processGO:0045087 innate immune response TAS
 biological_processGO:0050731 positive regulation of peptidyl-tyrosine phosphorylation IDA
 biological_processGO:0050776 regulation of immune response TAS
 biological_processGO:0050850 positive regulation of calcium-mediated signaling IDA
 biological_processGO:0070374 positive regulation of ERK1 and ERK2 cascade IMP
 biological_processGO:0070392 detection of lipoteichoic acid IEA
 biological_processGO:0071223 cellular response to lipoteichoic acid IEA
 biological_processGO:0071224 cellular response to peptidoglycan IEA
 biological_processGO:0097028 dendritic cell differentiation IDA
 biological_processGO:1903078 positive regulation of protein localization to plasma membrane IDA
 biological_processGO:1903082 positive regulation of C-C chemokine receptor CCR7 signaling pathway IDA
 biological_processGO:2000350 positive regulation of CD40 signaling pathway IDA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IDA
 molecular_functionGO:0001530 lipopolysaccharide binding IEA
 molecular_functionGO:0005543 phospholipid binding IDA
 molecular_functionGO:0042834 peptidoglycan binding IEA
 molecular_functionGO:0070891 lipoteichoic acid binding IEA
 molecular_functionGO:0097110 scaffold protein binding IPI


Pathways (from Reactome)
Pathway description
Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell
DAP12 interactions
DAP12 signaling
Other semaphorin interactions


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000020 Urinary incontinence "Loss of the ability to control the urinary bladder leading to involuntary urination." [HPO:sdoelken]
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 HP:0000217 Xerostomia "Dryness of the mouth due to salivary gland dysfunction." [HPO:curators]
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 HP:0000238 Hydrocephalus 
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 HP:0000474 Excess nuchal skin 
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 HP:0000504 Abnormality of vision "Abnormality of eyesight (visual perception)." [HPO:curators]
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 HP:0000657 Oculomotor apraxia 
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 HP:0000709 Psychosis "A condition characterized by changes of personality and thought patterns often accompanied by hallucinations and delusional beliefs." [HPO:curators]
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 HP:0000710 Hyperorality 
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 HP:0000711 Restlessness 
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 HP:0000712 Emotional lability 
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 HP:0000713 Agitation 
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 HP:0000716 Depression "A condition characterized by pervasive dysphoric mood, loss of interests, and inability to experience pleasure." [HPO:curators]
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 HP:0000718 Aggressive behavior "Aggressive behavior can denote verbal aggression, physical aggression against objects, physical aggression against people, and may also include aggression towards oneself." [HPO:curators]
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 HP:0000719 Inappropriate behavior 
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 HP:0000723 Restrictive behaviour, interests, and activities 
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 HP:0000726 Dementia 
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 HP:0000727 Frontal lobe dementia 
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 HP:0000733 Stereotyped, repetitive behaviour 
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 HP:0000734 Disinhibition 
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 HP:0000737 Irritability 
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 HP:0000738 Hallucinations 
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 HP:0000739 Anxiety 
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 HP:0000741 Apathy 
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 HP:0000751 Personality changes 
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 HP:0000757 Lack of insight 
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 HP:0001155 Abnormality of the hand "An abnormality affecting one or both hands." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001276 Hypertonia 
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001289 Confusion "Lack of clarity and coherence of thought, perception, understanding, or action." [HPO:curators]
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 HP:0001300 Parkinsonism 
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 HP:0001336 Myoclonus "Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001376 Decreased mobility of joints 
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 HP:0001760 Abnormality of the feet "An abnormality of the feet (foot deformity) is a disorder of the foot that can either be congenital or acquired. Such deformities can include hammer toe, club foot deformity, flat feet, pes cavus, Congenital vertical talus (rocker bottom foot) & etc." [HPO:curators]
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 HP:0002017 Nausea and vomiting 
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 HP:0002059 Cerebral atrophy 
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 HP:0002069 Generalized tonic-clonic seizures "Generalized tonic-clonic seizures are `generalized seizures` (HP:0002197) in which the patient suddenly loses conciousness, the eyes roll back, and the entire body musculature undergoes tonic contractions. In the clonic phase of the seizure, there are rhythmic contractions of the musculature alternating with relaxation of all muscle groups. Loss of sphincter control during the seizure is common. This form of seizure was formerly commonly called grand mal seizure." [HPO:curators]
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 HP:0002071 Extrapyramidal signs 
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 HP:0002072 Chorea "Chorea (Greek for dance ) refers to widespread arrhythmic involuntary movements of a forcible, jerky and restless fashion." [HPO:curators]
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002094 Dyspnea 
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 HP:0002119 Ventriculomegaly 
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002127 Upper motor neuron abnormality 
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 HP:0002135 Basal ganglia calcification "Calcification affecting one or more structures of the basal ganglia." [HPO:curators]
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 HP:0002145 Frontotemporal dementia 
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 HP:0002167 Neurological speech impairment 
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 HP:0002171 Gliosis 
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 HP:0002180 Neurodegeneration 
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 HP:0002185 Neurofibrillary tangles 
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 HP:0002186 Apraxia "A defect in the understanding of complex motor commands and in the execution of certain learned movements, i.e., deficits in the cognitive components of learned movements." [HPO:curators]
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 HP:0002300 Mutism 
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 HP:0002340 Caudate atrophy 
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 HP:0002352 Leukoencephalopathy 
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0002354 Memory impairment 
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 HP:0002357 Dysphasia 
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 HP:0002366 Lower motor neuron signs 
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 HP:0002371 Loss of speech 
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 HP:0002376 Developmental regression 
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 HP:0002380 Fasciculations "Fasciculations are observed as small, local, involuntary muscle contractions (twitching) visible under the skin. Fasciculations result from increased irritability of an axon (which in turn is often a manifestation of disease of a motor neuron). This leads to sporadic discharges of all the muscle fibers controlled by the axon in isolation from other motor units." [HPO:curators]
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 HP:0002381 Aphasia 
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 HP:0002427 Motor aphasia 
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 HP:0002442 Dyscalculia 
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 HP:0002446 Astrocytosis 
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 HP:0002463 Language impairment 
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 HP:0002465 Poor speech 
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 HP:0002476 Primitive reflexes (palmomental, snout, glabellar) 
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 HP:0002488 Acute leukemia 
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 HP:0002493 Corticospinal tract dysfunction 
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 HP:0002500 Abnormality of the cerebral white matter 
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 HP:0002514 Cerebral calcification "The presence of calcification within brain structures." [HPO:curators]
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 HP:0002652 Skeletal dysplasia 
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 HP:0002653 Bone pain 
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 HP:0002756 Pathologic fracture "A pathologic fracture occurs when a bone breaks in an area that is weakened secondary to another disease process such as tumor, infection, and certain inherited bone disorders. A pathologic fracture can occur without a degree of trauma required to cause fracture in healthy bone." [HPO:curators]
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 HP:0002829 Arthralgia 
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 HP:0002878 Early respiratory failure 
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003324 Generalized muscle weakness "Generalized weakness or decreased strength of the muscles." [HPO:curators]
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 HP:0003394 Muscle cramps 
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 HP:0003447 Axonal loss 
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 HP:0003470 Paralysis "Paralysis of voluntary muscles means loss of contraction due to interruption of one or more motor pathways from the brain to the muscle fibers. Although the word paralysis is often used interchangeably to mean either complete or partial loss of muscle strength, it is preferable to use paralysis or plegia for complete or severe loss of muscle strength, and paresis for partial or slight loss. Motor paralysis results from deficits of the upper motor neurons (corticospinal, corticobulbar, or subcorticospinal). Motor paralysis is often accompanied by an impairment in the facility of movement." [HPO:curators]
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 HP:0003487 Babinski sign "Upturning of the big toe (and sometimes fanning of the other toes) in response to stimulation of the sole of the foot. If the Babinski sign is present it can indicate damage to the corticospinal tract." [HPO:curators]
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 HP:0003791 Deposits immunoreactive to beta-amyloid protein 
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 HP:0004349 Reduced bone mineral density "A reduction of bone mineral density, that is, of the amount of matter per cubic centimeter of bones." [HPO:curators]
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 HP:0005930 Abnormality of the epiphyses 
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 HP:0005945 Laryngeal obstruction 
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 HP:0006892 Cerebral atrophy, frontotemporal, progressive 
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 HP:0006977 Grammar-specific speech disorder 
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 HP:0007112 Mri shows frontal and temporal cortical atrophy 
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 HP:0007354 Amyotrophic lateral sclerosis 
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 HP:0009124 Abnormality of adipose tissue "An abnormality of adipose (or fat) tissue, which is loose connective tissue composed of adipocytes." [HPO:curators]
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 HP:0010522 Dyslexia "A learning disorder characterized primarily by difficulties in learning to read and spell. Dyslectic children also exhibit a tendency to read words from right to left and to confuse letters such as b and d whose orientation is important for their identification. Children with dyslexia appear to be impaired in phonemic skills (the ability to associate visual symbols with the sounds they represent)." [HPO:curators]
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 HP:0010523 Alexia "An acquired type of sensory aphasia where damage to the brain leads to the loss of the ability to read." [HPO:curators]
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 HP:0010524 Agnosia "Inability to recognize objects not because of sensory deficit but because of the inability to combine components of sensory impressions into a complete pattern. Thus, agnosia is a neurological condition which results in an inability to know, to name, to identify, and to extract meaning from visual, auditory, or tactile impressions." [HPO:curators]
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 HP:0010525 Finger agnosia "An inability or difficulty differentiating among the fingers of either hand as well as the hands of others." [HPO:curators]
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 HP:0010526 Dysgraphia "A writing disability in the absence of motor or sensory deficits of the upper extremities, resulting in an impairment in the ability to write regardless of the ability to read and not due to intellectual impairment." [HPO:curators]
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 HP:0010529 Echolalia "The tendency to repeat vocalizations made by another person." [HPO:curators]
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 HP:0011096 Peripheral demyelination "A loss of myelin from the internode regions along myelinated nerve fibers of the peripheral nervous system." [HPO:probinson]
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 HP:0011204 EEG with continuous slow activity "EEG showing diffuse slowing without interruption." [HPO:jalbers]
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 HP:0012062 Bone cyst "A fluid filled cavity that develops with a bone." [HPO:probinson]
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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 HP:0012433 Abnormal social behavior "An abnormality of actions or reactions of a person taking place during interactions with others." [HPO:probinson]
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 HP:0012444 Brain atrophy "Partial or complete wasting (loss) of brain tissue that was once present." [HPO:probinson]
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 HP:0012531 Pain "An unpleasant sensory and emotional experience associated with actual or potential tissue damage, or described in terms of such damage." [ORCID:0000-0001-5208-3432]
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 HP:0012658 Abnormal brain FDG positron emission tomography "An anomaly detectable in [18F]-fluorodeoxyglucose (FDG) positron emission tomography (PET) brain scans. Glucose uptake measured with FDG-PET is a marker of neuronal metabolic activity." [HPO:probinson]
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 HP:0012671 Abulia "Poverty of behavior and speech output, lack of initiative, loss of emotional responses, psychomotor slowing, and prolonged speech latency." [HPO:probinson, pmid:16030444, UToronto:HTrang]
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 HP:0012719 Functional abnormality of the gastrointestinal tract "Abnormal functionality of the gastrointestinal tract." [HPO:probinson]
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 HP:0030195 Fatigable weakness of swallowing muscles "A type of weakness of the muscles involved in swallowing that occurs after a muscle group is used and lessens if the muscle group has some rest. That is, there is diminution of strength with repetitive muscle actions." [pmid:17986328, UK:rheller]
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 HP:0030196 Fatigable weakness of respiratory muscles "A type of weakness of the muscles involved in breathing (respiration) that occurs after a muscle group is used and lessens if the muscle group has some rest. That is, there is diminution of strength with repetitive muscle actions." [UNCL:mbertoli]
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 HP:0030212 Collectionism "Excessive or pathological tendency to save and collect possessions." []
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 HP:0030213 Emotional blunting "Lack of emotional reactivity and empathy for situations or persons, sometime also for family members." [ICM:PCaroppo]
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 HP:0030219 Semantic dementia "A progressive loss of the ability to remember the meaning of words, faces and objects." [ICM:PCaroppo, pmid:24966676]
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 HP:0030222 Visual agnosia "Difficulty in recognizing objects by visual input in absence of sensorial visual impairment." [ICM:PCaroppo]
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 HP:0030223 Perseveration "Perseveration can be defined as the contextually inappropriate and unintentional repetition of a response or behavioral unit. In other words, the observed repetitiveness does not meet the demands of the situation, is not the product of deliberation, and may even unfold despite counterintention. Perseveration can therefore be differentiated from goal-directed and intentional forms of repetition, such as linguistic redundancies designed to enhance communicative or poetic impact." [HPO:probinson, pmid:9050113]
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 HP:0030391 Spoken Word Recognition Deficit "Reduced ability of lexical discrimination, which refers to the process of distinguishing a stimulus word from other phonologically similar words. Lexical discrimination can be defined as the process of correctly identifying words in the mental lexicon to match the phonological input of a stimulus." [HPO:probinson]
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 HP:0030784 Anomia "An inability to name people and objects that are correctly perceived. The individual is able to describe the object in question, but cannot provide the name." [] {comment="HPO:probinson"}
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 HP:0100256 Senile plaques "Senile plaques are extracellular deposits of amyloid in the gray matter of the brain." [HPO:sdoelken]
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 HP:0500014 Abnormal test result "Abnormal finding in a diagnostic test or assay." []
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000105647 O00459 / PIK3R2 / phosphoinositide-3-kinase regulatory subunit 2  / complex / reaction
 ENSG00000121879 P42336 / PIK3CA / phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha  / complex / reaction
 ENSG00000011600 O43914 / TYROBP / TYRO protein tyrosine kinase binding protein  / reaction / complex
 ENSG00000051382 P42338 / PIK3CB / phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta  / complex / reaction
 ENSG00000145675 P27986 / PIK3R1 / phosphoinositide-3-kinase regulatory subunit 1  / complex / reaction
 ENSG00000010810 FYN / P06241 / FYN proto-oncogene, Src family tyrosine kinase  / reaction / complex
 ENSG00000165025 SYK / P43405 / spleen associated tyrosine kinase  / reaction / complex
 ENSG00000137872 Q8NFY4 / SEMA6D / semaphorin 6D  / reaction / complex
 ENSG00000182866 LCK / P06239 / LCK proto-oncogene, Src family tyrosine kinase  / reaction / complex
 ENSG00000114554 PLXNA1 / Q9UIW2 / plexin A1  / complex






 

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