ENSG00000107249


Homo sapiens

Features
Gene ID: ENSG00000107249
  
Biological name :GLIS3
  
Synonyms : GLIS3 / GLIS family zinc finger 3 / Q8NEA6
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 9
Strand: -1
Band: p24.2
Gene start: 3824127
Gene end: 4348392
  
Corresponding Affymetrix probe sets: 229435_at (Human Genome U133 Plus 2.0 Array)   230258_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000419914
Ensembl peptide - ENSP00000418995
Ensembl peptide - ENSP00000495666
Ensembl peptide - ENSP00000325494
Ensembl peptide - ENSP00000371398
Ensembl peptide - ENSP00000417794
Ensembl peptide - ENSP00000417883
Ensembl peptide - ENSP00000418005
Ensembl peptide - ENSP00000418671
NCBI entrez gene - 169792     See in Manteia.
OMIM - 610192
RefSeq - XM_017014361
RefSeq - XM_006716731
RefSeq - XM_011517763
RefSeq - XM_011517764
RefSeq - XM_011517765
RefSeq - XM_011517766
RefSeq - XM_011517767
RefSeq - XM_011517769
RefSeq - NM_001042413
RefSeq - NM_152629
RefSeq - XM_005251386
RefSeq - XM_005251387
RefSeq - XM_005251388
RefSeq - XM_005251389
RefSeq Peptide - NP_001035878
RefSeq Peptide - NP_689842
swissprot - A0A0S2Z689
swissprot - F8WEV9
swissprot - Q1PHJ8
swissprot - Q1PHJ2
swissprot - Q8NEA6
Ensembl - ENSG00000107249
  
Related genetic diseases (OMIM): 610199 - Diabetes mellitus, neonatal, with congenital hypothyroidism, 610199

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 glis3ENSDARG00000069726Danio rerio
 GLIS3ENSGALG00000010180Gallus gallus
 Glis3ENSMUSG00000052942Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
GLI3 / P10071 / GLI family zinc finger 3ENSG0000010657129
GLIS1 / Q8NBF1 / GLIS family zinc finger 1ENSG0000017433229
GLI2 / P10070 / GLI family zinc finger 2ENSG0000007404728
GLI1 / P08151 / GLI family zinc finger 1ENSG0000011108721
ZIC5 / Q96T25 / Zic family member 5ENSG0000013980016
GLIS2 / Q9BZE0 / GLIS family zinc finger 2ENSG0000012660314
ZIC2 / O95409 / Zic family member 2ENSG0000004335513
ZIC3 / O60481 / Zic family member 3ENSG0000015692513
ZIC1 / Q15915 / Zic family member 1ENSG0000015297713
ZIC4 / Q8N9L1 / Zic family member 4ENSG0000017496312


Protein motifs (from Interpro)
Interpro ID Name
 IPR013087  Zinc finger C2H2-type
 IPR030405  Zinc finger protein GLIS3
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II ISS
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006366 transcription by RNA polymerase II ISS
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II ISS
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000113 Polycystic kidney 
Show

 HP:0000219 Thin upper lip 
Show

 HP:0000260 Wide anterior fontanel "Enlargement of the anterior fontanelle with respect to age-dependent norms." [HPO:curators]
Show

 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
Show

 HP:0000343 Long philtrum 
Show

 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
Show

 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
Show

 HP:0000453 Choanal atresia "Absence or abnormal closure of the choana (the posterior nasal aperture)." [HPO:curators]
Show

 HP:0000557 Buphthalmos "Buphthalmos refers to a congenital open-angle glaucoma of the eye. The term buphthalmos (from Greek bous or ox and ophthalmos or eye) is descriptive of an enlarged eyeglobe resulting from increased intraocular pressure. The eyeglobe is especially prone to distension in newborns and infants because its collagen filaments are not as rigid as in adults and may easily be stretched." [HPO:curators]
Show

 HP:0000819 Diabetes mellitus 
Show

 HP:0000851 Congenital hypothyroidism 
Show

 HP:0000938 Osteopenia "Osteopenia refers to a reduction in bone mineral density (BMD) below normal peak BMD but not low enough to be classified as osteoporosis. According to the WHO, osteopenia is characterized by a value of BMD more than 1 standard deviation below the young adult mean, but less than 2 standard deviations below this value." [HPO:curators]
Show

 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
Show

 HP:0001395 Hepatic fibrosis 
Show

 HP:0001396 Cholestasis 
Show

 HP:0001409 Portal hypertension 
Show

 HP:0001511 Intrauterine growth retardation 
Show

 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
Show

 HP:0001737 Pancreatic cysts 
Show

 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
Show

 HP:0002036 Hiatus hernia "A tendency for the upper part of the stomach to herniate into the thorax because of a weakness of the esophageal hiatus, which is the hole in the diaphragm through which the esophagus passes. Hiatus hernia can be asymptomatic or can lead to acid reflux symptoms (heartburn)." [HPO:curators]
Show

 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
Show

 HP:0002594 Pancreatic hypoplasia 
Show

 HP:0002719 Recurrent infections 
Show

 HP:0002944 Thoracolumbar scoliosis 
Show

 HP:0003812 Phenotypic variability 
Show

 HP:0004442 Sagittal craniosynostosis 
Show

 HP:0005280 Depressed nasal root and bridge 
Show

 HP:0030423 Splenic cyst "A closed sac located in the spleen." [HPO:probinson, pmid:24794024]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr