ENSG00000043355


Homo sapiens

Features
Gene ID: ENSG00000043355
  
Biological name :ZIC2
  
Synonyms : O95409 / ZIC2 / Zic family member 2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 13
Strand: 1
Band: q32.3
Gene start: 99981772
Gene end: 99986773
  
Corresponding Affymetrix probe sets: 223642_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000365514
NCBI entrez gene - 7546     See in Manteia.
OMIM - 603073
RefSeq - XM_011521110
RefSeq - NM_007129
RefSeq Peptide - NP_009060
swissprot - O95409
swissprot - A0A024RDY6
Ensembl - ENSG00000043355
  
Related genetic diseases (OMIM): 609637 - Holoprosencephaly 5, 609637

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 zic2aENSDARG00000015554Danio rerio
 zic2bENSDARG00000037178Danio rerio
 ZIC2ENSGALG00000041083Gallus gallus
 Zic2ENSMUSG00000061524Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ZIC1 / Q15915 / Zic family member 1ENSG0000015297764
ZIC3 / O60481 / Zic family member 3ENSG0000015692559
ZIC5 / Q96T25 / Zic family member 5ENSG0000013980047
ZIC4 / Q8N9L1 / Zic family member 4ENSG0000017496338
GLI2 / P10070 / GLI family zinc finger 2ENSG0000007404728
GLI3 / P10071 / GLI family zinc finger 3ENSG0000010657128
GLI1 / P08151 / GLI family zinc finger 1ENSG0000011108723
GLIS3 / Q8NEA6 / GLIS family zinc finger 3ENSG0000010724923
GLIS1 / Q8NBF1 / GLIS family zinc finger 1ENSG0000017433220
GLIS2 / Q9BZE0 / GLIS family zinc finger 2ENSG0000012660319


Protein motifs (from Interpro)
Interpro ID Name
 IPR013087  Zinc finger C2H2-type
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0007420 brain development TAS
 biological_processGO:0007601 visual perception ISS
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated ISS
 biological_processGO:0045893 positive regulation of transcription, DNA-templated ISS
 biological_processGO:0051091 positive regulation of DNA-binding transcription factor activity ISS
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0016604 nuclear body IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding ISS
 molecular_functionGO:0003700 DNA-binding transcription factor activity ISS
 molecular_functionGO:0031490 chromatin DNA binding ISS
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000202 Cleft lip/palate 
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000238 Hydrocephalus 
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 HP:0000243 Trigonocephaly 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000341 Narrow forehead "An abnormally reduced side-to-side width of the forehead." [HPO:curators]
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 HP:0000400 Large ears 
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 HP:0000582 Upslanting palpebral fissures 
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 HP:0000601 Hypotelorism 
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 HP:0000664 Synophrys "Fusion of the left and right `eyebrow` (FMA:54237)." [HPO:probinson]
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 HP:0001249 Mental retardation 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001360 Holoprosencephaly "Holoprosencephaly is a structural anomaly of the brain in which the developing forebrain fails to divide into two separate hemispheres and ventricles." [gc:hpe]
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 HP:0001999 Facial dysmorphism 
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 HP:0005280 Depressed nasal root and bridge 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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