ENSG00000156925


Homo sapiens

Features
Gene ID: ENSG00000156925
  
Biological name :ZIC3
  
Synonyms : O60481 / ZIC3 / Zic family member 3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: 1
Band: q26.3
Gene start: 137566142
Gene end: 137577691
  
Corresponding Affymetrix probe sets: 207197_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000287538
Ensembl peptide - ENSP00000359638
NCBI entrez gene - 7547     See in Manteia.
OMIM - 300265
RefSeq - XM_017029802
RefSeq - NM_003413
RefSeq Peptide - NP_003404
RefSeq Peptide - NP_001317590
swissprot - O60481
Ensembl - ENSG00000156925
  
Related genetic diseases (OMIM): 300265 - Heterotaxy, visceral, 1, X-linked 306955
  306955 - Congenital heart defects, nonsyndromic, 1, X-linked, 306955
  314390 - VACTERL association, X-linked, 314390

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 zic3ENSDARG00000071497Danio rerio
 ZIC3ENSGALG00000031144Gallus gallus
 Zic3ENSMUSG00000067860Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ZIC2 / O95409 / Zic family member 2ENSG0000004335568
ZIC1 / Q15915 / Zic family member 1ENSG0000015297765
ZIC5 / Q96T25 / Zic family member 5ENSG0000013980047
ZIC4 / Q8N9L1 / Zic family member 4ENSG0000017496342
GLI2 / P10070 / GLI family zinc finger 2ENSG0000007404729
GLI3 / P10071 / GLI family zinc finger 3ENSG0000010657129
GLIS3 / Q8NEA6 / GLIS family zinc finger 3ENSG0000010724925
GLI1 / P08151 / GLI family zinc finger 1ENSG0000011108725
GLIS1 / Q8NBF1 / GLIS family zinc finger 1ENSG0000017433221
GLIS2 / Q9BZE0 / GLIS family zinc finger 2ENSG0000012660321


Protein motifs (from Interpro)
Interpro ID Name
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001947 heart looping IMP
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007368 determination of left/right symmetry IMP
 biological_processGO:0007389 pattern specification process IEA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0009952 anterior/posterior pattern specification IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0030324 lung development IMP
 biological_processGO:0035019 somatic stem cell population maintenance TAS
 biological_processGO:0035469 determination of pancreatic left/right asymmetry IMP
 biological_processGO:0035545 determination of left/right asymmetry in nervous system IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated ISS
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 biological_processGO:0071907 determination of digestive tract left/right asymmetry IMP
 biological_processGO:0071910 determination of liver left/right asymmetry IMP
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005737 cytoplasm ISS
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0043565 sequence-specific DNA binding IDA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
POU5F1 (OCT4), SOX2, NANOG activate genes related to proliferation
Transcriptional regulation of pluripotent stem cells


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000068 Urethral atresia 
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 HP:0000104 Renal agenesis 
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 HP:0000105 Enlarged kidneys 
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 HP:0000126 Hydronephrosis 
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 HP:0000238 Hydrocephalus 
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 HP:0000316 Hypertelorism 
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 HP:0000925 Abnormality of the vertebral column "Any abnormality of the spine (vertebral column)." [HPO:curators]
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 HP:0001161 Polydactyly (hands) 
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 HP:0001417 X-linked inheritance "A mode of inheritance that is observed for traits related to a gene encoded on the X chromosome." [HPO:curators]
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 HP:0001419 X-linked recessive inheritance "A mode of inheritance that is observed for recessive traits related to a gene encoded on the X chromosome. In the context of medical genetics, X-linked recessive disorders manifest in males (who have one copy of the X chromosome and are thus hemizygotes), but generally not in female heterozygotes who have one mutant and one normal allele." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
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 HP:0001640 Cardiomegaly 
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 HP:0001642 Pulmonic stenosis "A narrowing of the right ventricular outflow tract that can occur at the pulmonary valve (valvular stenosis) or just below the pulmonary valve (infundibular stenosis). Infundibular pulmonic stenosis is mostly caused by overgrowth of the heart muscle wall (hypertrophy of the septoparietal trabeculae). Pulmonic stenosis is often seen as a part of Fallot s tetralogy, in which case the events leading to the formation of the overriding aorta are also believed to be a cause of the pulmonic stenosis. The pulmonic stenosis is the major cause of the malformations seen in patients with Fallot tetralogy, with the other associated malformations acting as compensatory mechanisms to the pulmonic stenosis. The degree of stenosis varies between individuals with TOF, and is the primary determinant of symptoms and severity. This malformation is infrequently described as sub-pulmonary stenosis or subpulmonary obstruction." [HPO:curators]
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 HP:0001643 Patent ductus arteriosus 
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 HP:0001651 Dextrocardia "A left-right reversal (or "mirror reflection") of the anatomical location of the heart in which the heart is locate on the right side in stead of the left." [HPO:sdoelken]
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 HP:0001669 Transposition of the great vessels 
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 HP:0001746 Asplenia "Absence (aplasia) of the spleen." [HPO:curators]
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 HP:0001748 Polysplenia "Polysplenia is a congenital disease manifested by multiple small accessory spleens." [HPO:curators]
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 HP:0001750 Single ventricle 
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 HP:0002023 Anal atresia "Congenital absence of the anus, i.e., the opening at the bottom end of the intestinal tract." [HPO:curators]
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 HP:0002575 Tracheoesophageal fistula "An abnormal connection (fistula) between the esophagus and the trachea." [HPO:curators]
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 HP:0003363 Abdominal situs inversus "A left-right reversal (or "mirror reflection") of the anatomical location of the abdominal organs." [HPO:curators]
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 HP:0003468 Abnormalities of the vertebrae 
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 HP:0003812 Phenotypic variability 
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 HP:0003974 Absent ossification/absence of radius 
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 HP:0005792 Humeral hypoplasia 
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 HP:0006695 Tricuspid and mitral valves are replaced by a single inlet valve 
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 HP:0009623 Proximally placed thumb "Proximally displaced thumb." [HPO:curators]
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 HP:0011560 Mitral atresia "A congenital defect with failure to open of the mitral valve orifice." [DDD:dbrown]
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 HP:0011565 Common atrium "Complete absence of the interatrial septum with common atrioventricular valve and two atrioventricular connections." [DDD:dbrown, HPO:probinson]
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 HP:0012890 Posteriorly placed anus "Posterior malposition of the anus." [UToronto:htrang]
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 HP:0030680 Abnormality of cardiovascular system morphology "Any structural anomaly of the heart and great vessels." []
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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