ENSG00000074047


Homo sapiens

Features
Gene ID: ENSG00000074047
  
Biological name :GLI2
  
Synonyms : GLI2 / GLI family zinc finger 2 / P10070
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: q14.2
Gene start: 120735623
Gene end: 120992653
  
Corresponding Affymetrix probe sets: 207034_s_at (Human Genome U133 Plus 2.0 Array)   208057_s_at (Human Genome U133 Plus 2.0 Array)   228537_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000441454
Ensembl peptide - ENSP00000403715
Ensembl peptide - ENSP00000415773
Ensembl peptide - ENSP00000344473
Ensembl peptide - ENSP00000354586
Ensembl peptide - ENSP00000390436
Ensembl peptide - ENSP00000397488
Ensembl peptide - ENSP00000398992
Ensembl peptide - ENSP00000400593
Ensembl peptide - ENSP00000402383
NCBI entrez gene - 2736     See in Manteia.
OMIM - 165230
RefSeq - XM_017003818
RefSeq - XM_011510969
RefSeq - XM_011510970
RefSeq - XM_011510971
RefSeq - XM_011510972
RefSeq - XM_011510973
RefSeq - XM_011510974
RefSeq - NM_005270
RefSeq - XM_006712422
RefSeq Peptide - NP_005261
swissprot - H0YG23
swissprot - H7C1U2
swissprot - F2Z2B4
swissprot - P10070
swissprot - Q1PSW9
Ensembl - ENSG00000074047
  
Related genetic diseases (OMIM): 610829 - Holoprosencephaly 9, 610829
  615849 - Culler-Jones syndrome, 615849

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gli2bENSDARG00000020884Danio rerio
 GLI2ENSGALG00000011630Gallus gallus
 Gli2ENSMUSG00000048402Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
GLI3 / P10071 / GLI family zinc finger 3ENSG0000010657145
GLI1 / P08151 / GLI family zinc finger 1ENSG0000011108728
GLIS3 / Q8NEA6 / GLIS family zinc finger 3ENSG0000010724916
GLIS1 / Q8NBF1 / GLIS family zinc finger 1ENSG0000017433213
GLIS2 / Q9BZE0 / GLIS family zinc finger 2ENSG0000012660312
ZIC5 / Q96T25 / Zic family member 5ENSG0000013980010
ZIC3 / O60481 / Zic family member 3ENSG000001569259
ZIC2 / O95409 / Zic family member 2ENSG000000433559
ZIC1 / Q15915 / Zic family member 1ENSG000001529778
ZIC4 / Q8N9L1 / Zic family member 4ENSG000001749637


Protein motifs (from Interpro)
Interpro ID Name
 IPR013087  Zinc finger C2H2-type
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0001501 skeletal system development IEA
 biological_processGO:0001649 osteoblast differentiation IEA
 biological_processGO:0001701 in utero embryonic development IEA
 biological_processGO:0001822 kidney development IEA
 biological_processGO:0002009 morphogenesis of an epithelium IEA
 biological_processGO:0002062 chondrocyte differentiation IEA
 biological_processGO:0002076 osteoblast development IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007224 smoothened signaling pathway IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007389 pattern specification process IEA
 biological_processGO:0007411 axon guidance IEA
 biological_processGO:0007418 ventral midline development IEA
 biological_processGO:0007442 hindgut morphogenesis IEA
 biological_processGO:0007507 heart development IEA
 biological_processGO:0008283 cell proliferation IEA
 biological_processGO:0008284 positive regulation of cell proliferation IEA
 biological_processGO:0008589 regulation of smoothened signaling pathway IEA
 biological_processGO:0009612 response to mechanical stimulus IEA
 biological_processGO:0009952 anterior/posterior pattern specification IEA
 biological_processGO:0009953 dorsal/ventral pattern formation IEA
 biological_processGO:0009954 proximal/distal pattern formation IEA
 biological_processGO:0021508 floor plate formation IEA
 biological_processGO:0021513 spinal cord dorsal/ventral patterning IEA
 biological_processGO:0021517 ventral spinal cord development IEA
 biological_processGO:0021522 spinal cord motor neuron differentiation IEA
 biological_processGO:0021696 cerebellar cortex morphogenesis IEA
 biological_processGO:0021775 smoothened signaling pathway involved in ventral spinal cord interneuron specification IEA
 biological_processGO:0021776 smoothened signaling pathway involved in spinal cord motor neuron cell fate specification IEA
 biological_processGO:0021904 dorsal/ventral neural tube patterning IEA
 biological_processGO:0021915 neural tube development IEA
 biological_processGO:0021938 smoothened signaling pathway involved in regulation of cerebellar granule cell precursor cell proliferation IEA
 biological_processGO:0021965 spinal cord ventral commissure morphogenesis IEA
 biological_processGO:0021983 pituitary gland development IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0030324 lung development IEA
 biological_processGO:0030850 prostate gland development IEA
 biological_processGO:0030879 mammary gland development IEA
 biological_processGO:0030902 hindbrain development IEA
 biological_processGO:0032331 negative regulation of chondrocyte differentiation IEA
 biological_processGO:0033089 positive regulation of T cell differentiation in thymus ISS
 biological_processGO:0035295 tube development IEA
 biological_processGO:0042475 odontogenesis of dentin-containing tooth IEA
 biological_processGO:0042733 embryonic digit morphogenesis IEA
 biological_processGO:0043066 negative regulation of apoptotic process IEA
 biological_processGO:0045666 positive regulation of neuron differentiation IEA
 biological_processGO:0045740 positive regulation of DNA replication IDA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048566 embryonic digestive tract development IEA
 biological_processGO:0048589 developmental growth IEA
 biological_processGO:0048646 anatomical structure formation involved in morphogenesis IEA
 biological_processGO:0048666 neuron development IEA
 biological_processGO:0048754 branching morphogenesis of an epithelial tube IEA
 biological_processGO:0048856 anatomical structure development IEA
 biological_processGO:0060032 notochord regression IEA
 biological_processGO:0060322 head development IEA
 biological_processGO:0060513 prostatic bud formation IEA
 biological_processGO:0060603 mammary gland duct morphogenesis IEA
 biological_processGO:0060831 smoothened signaling pathway involved in dorsal/ventral neural tube patterning IEA
 biological_processGO:0071407 cellular response to organic cyclic compound IEA
 biological_processGO:0090103 cochlea morphogenesis IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005929 cilium ISS
 cellular_componentGO:0005930 axoneme IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0031514 motile cilium IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0097542 ciliary tip IEA
 cellular_componentGO:0097546 ciliary base TAS
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008134 transcription factor binding IEA
 molecular_functionGO:0008270 zinc ion binding IDA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:1990841 promoter-specific chromatin binding IEA


Pathways (from Reactome)
Pathway description
Degradation of GLI2 by the proteasome
Hedgehog off state
Hedgehog on state
GLI proteins bind promoters of Hh responsive genes to promote transcription
RUNX2 regulates chondrocyte maturation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000044 Hypogonadotrophic hypogonadism "Hypogonadotropic hypogonadism is characterized by reduced function of the gonads (testes in males or ovaries in females) and results from the absence of the gonadal stimulating pituitary hormones: follicle stimulating hormone (FSH) and luteinizing hormone (LH)." [HPO:curators]
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 HP:0000054 Micropenis 
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 HP:0000141 Amenorrhea 
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000204 Cleft lip "A gap in the `upper lip` (FMA:59817). This is a congenital defect resulting from nonfusion of tissues of the lip during embryonal development." [HPO:probinson]
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 HP:0000238 Hydrocephalus 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000322 Short philtrum 
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 HP:0000327 Hypoplasia of the maxilla "Underdevelopment of the `Maxilla` (FMA:9711)." [HPO:probinson]
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 HP:0000395 Prominent antihelix "Abnormally prominent antihelix." [HPO:curators]
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 HP:0000400 Large ears 
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 HP:0000457 Flat nose 
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 HP:0000528 Anophthalmia "Absence of a true eyeball." [HPO:curators]
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000601 Hypotelorism 
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 HP:0000609 Optic nerve hypoplasia 
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 HP:0000689 Dental malocclusion "Dental malocclusion refers to an abnormality of the occlusion, or alignment, of the teeth and the way the upper and lower teeth fit together, resulting in overcrowding of teeth or in abnormal bite patterns." [HPO:curators]
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 HP:0000789 Infertility 
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 HP:0000823 Delayed puberty 
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 HP:0000824 Growth hormone deficiency "Insufficient production of growth hormone, which is produced by the anterior pituitary gland." [HPO:curators]
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 HP:0000839 Pituitary dwarfism "A type of reduced stature with normal proportions related to dysfunction of the pituitary gland related to either an isolated defect in the secretion of growth hormone or to panhypopituitarism, i.e., a deficit of all the anterior pituitary hormones." [HPO:curators]
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 HP:0000871 Panhypopituitarism "A pituitary functional deficit affecting all the anterior pituitary hormones (growth hormone, thyroid-stimulating hormone, follicle-stimulating hormone, luteinizing hormone, adrenocorticotropic hormone, and prolactin)." [HPO:curators]
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 HP:0000873 Diabetes insipidus "A state of excessive water intake and hypotonic (dilute) polyuria. Diabetes insipidus may be due to failure of vasopressin (AVP) release (central or neurogenic diabetes insipidus) or to a failure of the kidney to respond to AVP (nephrogenic diabetes insipidus)." [HPO:curators]
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 HP:0000938 Osteopenia "Osteopenia refers to a reduction in bone mineral density (BMD) below normal peak BMD but not low enough to be classified as osteoporosis. According to the WHO, osteopenia is characterized by a value of BMD more than 1 standard deviation below the young adult mean, but less than 2 standard deviations below this value." [HPO:curators]
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 HP:0001162 Postaxial polydactyly (hands) "Supernumerary digits located at the ulnar side of the hand." [HPO:curators]
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001338 Partial agenesis of the corpus callosum "A partial failure of the development of the corpus callosum." [HPO:curators]
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 HP:0001360 Holoprosencephaly "Holoprosencephaly is a structural anomaly of the brain in which the developing forebrain fails to divide into two separate hemispheres and ventricles." [gc:hpe]
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 HP:0001943 Hypoglycemia "A lower than normal level of blood glucose." [HPO:curators]
Show

 HP:0002019 Constipation 
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 HP:0002536 Abnormal cortical gyration "An abnormality of the gyri (i.e., the ridges) of the cerebral cortex of the brain." [HPO:curators]
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 HP:0002615 Hypotension 
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 HP:0002744 Bilateral cleft lip/palate "Cleft lip/palate affecting both sides of the face." [HPO:curators]
Show

 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0002920 Decreased serum ACTH 
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 HP:0003745 Sporadic 
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 HP:0003828 Variable expressivity 
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 HP:0003829 Incomplete penetrance 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004637 decreased cervical spine mobility 
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0005625 Osteoporosis of vertebrae "Osteoporosis affecting predominantly the vertebrae." [HPO:curators]
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 HP:0006315 Single median maxillary central incisor "The presence of a single, centrally located maxillary `Incisor tooth` (FMA:12823) instead of the normal complement of a left and a right maxillary incisor tooth." [HPO:curators]
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 HP:0006485 Absence of incisors 
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 HP:0008187 Absence of secondary sex characteristics 
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 HP:0008245 Tsh deficient hypothyroidism 
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 HP:0008501 Median cleft lip/palate "Cleft lip or palate affecting the midline region of the palate." [HPO:curators]
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 HP:0008734 Decreased testicular size 
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 HP:0009888 Abnormality of secondary sexual hair "Abnormality of the growth of secondary sexual hair, which normally ensues during puberty. In males, secondary sexual hair usually comprises body hair, including underarm, abdominal, chest, and pubic hair. In females, secondary sexual hair usually comprises a lesser degree of body hair, most prominently underarm and pubic hair." [HPO:curators]
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 HP:0009932 Single nostril "The presence of only a single `nostril` (FMA:59645)." [pmid:19152422]
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 HP:0010290 Short hard palate "Distance between the labial point of the incisive papilla to the midline junction of the hard and soft palate more than 2 SD below the mean (objective) or apparently decreased length of the hard palate (subjective)." [pmid:19125428]
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 HP:0010311 Aplasia/Hypoplasia of the breasts "Absence or underdevelopment of the breasts." [HPO:curators]
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 HP:0010442 Polydactyly 
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 HP:0010626 Aplasia of the pituitary gland "Absence of the pituitary gland." [HPO:curators]
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 HP:0010627 Hypoplasia of the pituitary gland "Underdevelopment of the pituitary gland." [HPO:curators]
Show

 HP:0010650 Hypoplasia of the premaxilla "Underdevelopment of the `Premaxilla` (FMA:76869), which is the embryonic structure that forms the anterior part of the maxilla." [HPO:probinson]
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 HP:0011272 Underdeveloped tragus "Decreased posterolateral protrusion of the tragus." [pmid:19152421]
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 HP:0011344 Severe global developmental delay "A severe delay in the achievement of motor or mental milestones in the domains of development of a child." [DDD:hvfirth]
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 HP:0011755 Ectopic posterior pituitary "An abnormal anatomical location of the posterior lobe of the hypophysis, also known as the `neurohypophysis` (FMA:74628). The posterior pituitary is normally present in the dorsal portion of the sella turcica, but when ectopic is usually near the median eminence. This defect is likely to be due to abnormal migration during embryogenesis." [DDD:spark, HPO:probinson]
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 HP:0011800 Midface retrusion "Posterior positions and/or vertical shortening of the infraorbital and perialar regions, or increased concavity of the face and/or reduced nasolabial angle." [DDD:jclayton-smith]
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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 HP:0012731 Ectopic anterior pituitary gland "Abnormal anatomic location of the anterior pituitary gland." [HPO:probinson]
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 HP:0040075 Hypopituitarism 
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 HP:0040086 Abnormal prolactin level 
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 HP:0100259 Postaxial polydactyly "A form of polydactyly in which the extra digit or digits are localized on the side of the fifth finger or fifth toe." [HPO:probinson]
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 HP:0100842 Septo-optic dysplasia "Underdevelopment of the optic nerve and absence of the septum pellucidum." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000100387 RBX1 / P62877 / ring-box 1  / complex / reaction
 ENSG00000082701 GSK3B / P49841 / glycogen synthase kinase 3 beta  / reaction
 ENSG00000036257 CUL3 / Q13618 / cullin 3  / complex / reaction
 ENSG00000113712 P48729 / CSNK1A1 / casein kinase 1 alpha 1  / reaction
 ENSG00000072062 P17612 / PRKACA / protein kinase cAMP-activated catalytic subunit alpha  / reaction
 ENSG00000121067 SPOP / O43791 / speckle type BTB/POZ protein  / complex / reaction
 ENSG00000124813 RUNX2 / Q13950 / runt related transcription factor 2  / complex / reaction
 ENSG00000107882 SUFU / Q9UMX1 / SUFU negative regulator of hedgehog signaling  / reaction / complex
 ENSG00000142875 P22694 / PRKACB / protein kinase cAMP-activated catalytic subunit beta  / reaction
 ENSG00000134371 CDC73 / Q6P1J9 / cell division cycle 73  / reaction / complex
 ENSG00000165059 P22612 / PRKACG / protein kinase cAMP-activated catalytic subunit gamma  / reaction
 ENSG00000140474 ULK3 / Q6PHR2 / unc-51 like kinase 3  / reaction






 

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