ENSG00000124813


Homo sapiens

Features
Gene ID: ENSG00000124813
  
Biological name :RUNX2
  
Synonyms : Q13950 / runt related transcription factor 2 / RUNX2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: 1
Band: p21.1
Gene start: 45328157
Gene end: 45664349
  
Corresponding Affymetrix probe sets: 216994_s_at (Human Genome U133 Plus 2.0 Array)   221282_x_at (Human Genome U133 Plus 2.0 Array)   221283_at (Human Genome U133 Plus 2.0 Array)   232231_at (Human Genome U133 Plus 2.0 Array)   236858_s_at (Human Genome U133 Plus 2.0 Array)   236859_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000495497
Ensembl peptide - ENSP00000485863
Ensembl peptide - ENSP00000496517
Ensembl peptide - ENSP00000352514
Ensembl peptide - ENSP00000360486
Ensembl peptide - ENSP00000360491
Ensembl peptide - ENSP00000360493
Ensembl peptide - ENSP00000420707
Ensembl peptide - ENSP00000458178
Ensembl peptide - ENSP00000460188
Ensembl peptide - ENSP00000461357
NCBI entrez gene - 860     See in Manteia.
OMIM - 600211
RefSeq - XM_017011396
RefSeq - XM_011514963
RefSeq - XM_011514964
RefSeq - XM_011514965
RefSeq - XM_011514966
RefSeq - XM_017011391
RefSeq - XM_017011392
RefSeq - XM_017011393
RefSeq - XM_017011394
RefSeq - NM_001015051
RefSeq - NM_001024630
RefSeq - NM_001278478
RefSeq - XM_006715232
RefSeq - XM_011514960
RefSeq - XM_011514961
RefSeq - XM_011514962
RefSeq Peptide - NP_001265407
RefSeq Peptide - NP_001015051
RefSeq Peptide - NP_001019801
swissprot - I3L0L0
swissprot - A0A0D9SEN7
swissprot - Q13950
swissprot - I3L354
swissprot - I3L4L9
Ensembl - ENSG00000124813
  
Related genetic diseases (OMIM): 119600 - Cleidocranial dysplasia, 119600
  156510 - Metaphyseal dysplasia with maxillary hypoplasia with or without brachydactyly, 156510

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 runx2aENSDARG00000040261Danio rerio
 RUNX2ENSGALG00000040276Gallus gallus
 Runx2ENSMUSG00000039153Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RUNX1 / Q01196 / runt related transcription factor 1ENSG0000015921657
RUNX3 / Q13761 / runt related transcription factor 3ENSG0000002063350


Protein motifs (from Interpro)
Interpro ID Name
 IPR000040  Acute myeloid leukemia 1 protein (AML1)/Runt
 IPR008967  p53-like transcription factor, DNA-binding
 IPR012346  p53/RUNT-type transcription factor, DNA-binding domain superfamily
 IPR013524  Runt domain
 IPR013711  Runx, C-terminal domain
 IPR016554  Runt-related transcription factor RUNX
 IPR027384  Runx, central domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001501 skeletal system development IEA
 biological_processGO:0001503 ossification TAS
 biological_processGO:0001649 osteoblast differentiation TAS
 biological_processGO:0001958 endochondral ossification IEA
 biological_processGO:0002051 osteoblast fate commitment IEA
 biological_processGO:0002062 chondrocyte differentiation IBA
 biological_processGO:0002063 chondrocyte development IEA
 biological_processGO:0002076 osteoblast development IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0006367 transcription initiation from RNA polymerase II promoter TAS
 biological_processGO:0008284 positive regulation of cell proliferation IEA
 biological_processGO:0010628 positive regulation of gene expression IEA
 biological_processGO:0030097 hemopoiesis IBA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0030182 neuron differentiation IBA
 biological_processGO:0030217 T cell differentiation IEA
 biological_processGO:0030278 regulation of ossification IEA
 biological_processGO:0030509 BMP signaling pathway ISS
 biological_processGO:0032332 positive regulation of chondrocyte differentiation IEA
 biological_processGO:0035115 embryonic forelimb morphogenesis IEA
 biological_processGO:0040036 regulation of fibroblast growth factor receptor signaling pathway IEA
 biological_processGO:0042475 odontogenesis of dentin-containing tooth IEA
 biological_processGO:0042487 regulation of odontogenesis of dentin-containing tooth IEA
 biological_processGO:0045595 regulation of cell differentiation IBA
 biological_processGO:0045667 regulation of osteoblast differentiation IEA
 biological_processGO:0045669 positive regulation of osteoblast differentiation IMP
 biological_processGO:0045879 negative regulation of smoothened signaling pathway IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IDA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IDA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IMP
 biological_processGO:0048469 cell maturation IEA
 biological_processGO:0048701 embryonic cranial skeleton morphogenesis IEA
 biological_processGO:0048705 skeletal system morphogenesis IEA
 biological_processGO:0048863 stem cell differentiation IEA
 biological_processGO:0071773 cellular response to BMP stimulus ISS
 biological_processGO:1901522 positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus ISS
 cellular_componentGO:0000790 nuclear chromatin ISS
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005667 transcription factor complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity NAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0019904 protein domain specific binding IEA
 molecular_functionGO:0043425 bHLH transcription factor binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IEA
 molecular_functionGO:0070491 repressing transcription factor binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000162 Glossoptosis 
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000233 Thin vermillion border 
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 HP:0000239 Large fontanelles "In newborns, the two frontal bones, two parietal bones, and one occipital bone are joined by fibrous sutures, which form a small posterior fontanelle, and a larger, diamond-shaped anterior fontanelle. These regions allow for the skull to pass the birth canal and for later growth. The fontanelles gradually ossify, whereby the posterior fontanelle usually closes by eight weeks and the anterior fontanelle by the 9th to 16th month of age. Large fontanelles are diagnosed if the fontanelles are larger than age-dependent norms." [HPO:curators]
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 HP:0000242 Parietal bossing "Parietal bossing is an unusual prominence in the parietal region." [HPO:curators]
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 HP:0000246 Sinusitis 
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 HP:0000248 Brachycephaly "Brachycephaly refers to a short, wide head, which is often caused by premature closure of both coronal sutures." [HPO:curators]
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000303 Mandibular prognathia "Abnormal prominence of the chin related to an abnormally long mandible." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000322 Short philtrum 
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 HP:0000327 Hypoplasia of the maxilla "Underdevelopment of the `Maxilla` (FMA:9711)." [HPO:probinson]
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 HP:0000337 Broad forehead "Abnormally large side-to-side distance of the forehead." [HPO:curators]
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 HP:0000340 Sloping forehead "A form of the forehead that slopes from top to bottom in an anterior direction." [HPO:curators]
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000389 Chronic otitis media 
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 HP:0000444 Beaked nose 
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 HP:0000670 Carious teeth 
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 HP:0000680 Delayed eruption of deciduous teeth 
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 HP:0000682 Abnormality of dental enamel "An abnormality of the dental enamel, which is the external layer of the teeth, being a highly mineralized substance consisting primarily of hydroxylapatite." [HPO:curators]
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 HP:0000684 Delayed dentition "Delayed eruption of teeth." [HPO:curators]
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 HP:0000696 Delayed eruption of secondary teeth 
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 HP:0000772 Abnormality of the ribs 
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 HP:0000773 Short ribs 
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 HP:0000774 Narrow chest 
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 HP:0000882 Hypoplastic scapulae 
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 HP:0000891 Cervical ribs 
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 HP:0000894 Short clavicles 
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 HP:0000926 Platyspondyly 
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 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
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 HP:0001156 Brachydactyly 
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 HP:0001163 Abnormality of the metacarpal bones 
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 HP:0001172 Abnormality of the thumb 
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 HP:0001182 Tapered fingers 
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 HP:0001810 Dystrophic toenails 
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002643 Neonatal respiratory distress 
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 HP:0002645 Wormian bones 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002652 Skeletal dysplasia 
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 HP:0002659 Increased susceptibility to fractures "An abnormally increased tendency to fractures of bones caused by an abnormal reduction in bone strength that is generally associated with an increased risk of fracture." [HPO:sdoelken]
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 HP:0002684 Thickened calvaria "The presence of an abnormally thick calvaria." [HPO:curators]
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 HP:0002688 Absent frontal sinuses 
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 HP:0002689 Absent paranasal sinuses 
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 HP:0002700 Large foramen magnum "An abnormal increase in the size of the foramen magnum." [HPO:curators]
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 HP:0002705 High, narrow palate "The presence of a high and narrow palate." [HPO:curators]
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 HP:0002738 Hypoplastic frontal sinuses 
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 HP:0002757 Recurrent fractures "The repeated occurence of bone fractures (implying an abnormally increased tendency for fracture)." [HPO:curators]
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 HP:0002808 Kyphosis 
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 HP:0002812 Coxa vara 
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 HP:0002857 Genu valgum 
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 HP:0002866 Hypoplastic iliac wings 
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 HP:0003015 Metaphyseal flaring "The presence of splayed (i.e.,flared) metaphyseal segments of the long bones." [HPO:curators]
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 HP:0003183 Wide pubic symphysis "Abnormally increased width of the pubic symphysis is the midline cartilaginous joint uniting the superior rami of the left and right pubic bones." [HPO:curators]
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 HP:0003298 Spina bifida occulta "The closed form of spina bifida." [HPO:curators]
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 HP:0003302 Spondylolisthesis 
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 HP:0003304 Spondylolysis 
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 HP:0003396 Syringomyelia 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004220 Hypoplastic/small middle phalanx of the 5th finger "Absence or underdevelopment (hypoplasia) of the middle phalanx of the little (5th) finger." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004331 Decreased skull ossification "A reduction in the magnitude or amount of ossification of the skull." [HPO:curators]
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 HP:0004474 Persistent open anterior fontanelle "The anterior fontanelle generally ossifies by around the 18th month of life. A persistent open anterior fontanelle is diagnosed if closure is delayed beyond this age." [HPO:curators]
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 HP:0005107 Abnormality of the sacrum 
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 HP:0005259 Abnormal facility in opposing the shoulders 
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0005625 Osteoporosis of vertebrae "Osteoporosis affecting predominantly the vertebrae." [HPO:curators]
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 HP:0005877 Multiple small vertebral fractures 
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 HP:0005930 Abnormality of the epiphyses 
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 HP:0006040 Long second metacarpal 
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 HP:0006297 Hypoplastic dental enamel 
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 HP:0006480 Premature loss of teeth 
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 HP:0006660 Aplastic clavicles 
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 HP:0008391 Mildly dystrophic fingernails 
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 HP:0008788 Delayed pubic bone ossification 
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 HP:0008821 Hypoplastic inferior ilia 
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 HP:0008848 Moderately short stature "A moderate degree of short stature." [HPO:curators]
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 HP:0009577 Hypoplastic/small middle phalanx of the 2nd finger "Hypoplastic/small middle phalanx of the 2nd (index) finger." [HPO:curators]
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 HP:0010047 Hypoplastic/short 5th metacarpal 
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 HP:0010230 Cone-shaped epiphyses of the phalanges of the hand "A cone-shaped appearance of the epiphyses of the fingers of the hand, producing a ball-in-a-socket appearance. The related entity angel-shaped epiphysis refers to a pronounced cone-shaped epiphysis in combination with a pseudoepiphysis at the distal end of a phalanx." [HPO:curators]
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 HP:0010535 Sleep apnea "An intermittent cessation of airflow at the mouth and nose during sleep. Apneas of at least 10 seconds are considered important, but persons with sleep apnea may have apneas of 20 seconds to up to 2 or 3 minutes. Patients may have up to 15 events per hour of sleep." [HPO:curators]
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 HP:0010669 Hypoplasia of the zygomatic bone "Underdevelopment of the `zygomatic bone` (FMA:52747)." [HPO:probinson]
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 HP:0010751 Chin dimple "A persistent midline depression of the skin over the fat pad of the chin." [pmid:19125436]
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 HP:0010807 Open bite "Visible space between the dental arches in occlusion." [pmid:19125428]
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 HP:0011001 Increased bone mineral density "An abnormal increase of bone mineral density, that is, of the amount of matter per cubic centimeter of bones which is often refered to as osteosclerosis. Osteosclerosis can be detected on radiological examination as an increased whiteness (density) of affected bones." [HPO:curators]
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 HP:0011069 Increased number of teeth "The presence of a `supernumerary` (PATO:0000470), i.e., extra, `tooth` (FMA:12516) or teeth." [HPO:ibailleulforestier]
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 HP:0011219 Short face "Facial height (length) is more than two standard deviations below the mean (objective); or an apparent decrease in the height (length) of the face (subjective)." [pmid:19125436]
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 HP:0011800 Midface retrusion "Posterior positions and/or vertical shortening of the infraorbital and perialar regions, or increased concavity of the face and/or reduced nasolabial angle." [DDD:jclayton-smith]
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 HP:0100255 Metaphyseal dysplasia "The presence of dysplastic regions in metaphyseal bones." [HPO:sdoelken]
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 HP:0100864 Hypoplasia of the femoral neck 
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 HP:0200021 Rounded shoulders 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000100030 MAPK1 / P28482 / mitogen-activated protein kinase 1  / reaction
 ENSG00000114315 HES1 / Q14469 / hes family bHLH transcription factor 1  / complex / reaction
 ENSG00000082701 GSK3B / P49841 / glycogen synthase kinase 3 beta  / complex / reaction
 ENSG00000119042 SATB2 / Q9UPW6 / SATB homeobox 2  / reaction / complex
 ENSG00000135446 CDK4 / P11802 / cyclin dependent kinase 4  / reaction
 ENSG00000102882 MAPK3 / P27361 / mitogen-activated protein kinase 3  / reaction
 ENSG00000123124 WWP1 / Q9H0M0 / WW domain containing E3 ubiquitin protein ligase 1  / complex / reaction
 ENSG00000134057 CCNB1 / P14635 / cyclin B1  / reaction
 ENSG00000139687 RB1 / P06400 / RB transcriptional corepressor 1  / reaction / complex
 ENSG00000067955 CBFB / Q13951 / core-binding factor beta subunit  / complex / reaction
 ENSG00000170836 PPM1D / O15297 / protein phosphatase, Mg2+/Mn2+ dependent 1D  / reaction
 ENSG00000137693 YAP1 / P46937 / Yes associated protein 1  / complex / reaction
 ENSG00000171720 HDAC3 / O15379 / histone deacetylase 3  / complex / reaction
 ENSG00000164683 HEY1 / Q9Y5J3 / hes related family bHLH transcription factor with YRPW motif 1  / reaction / complex
 ENSG00000170312 CDK1 / P06493 / cyclin dependent kinase 1  / reaction
 ENSG00000074047 GLI2 / P10070 / GLI family zinc finger 2  / complex / reaction
 ENSG00000094631 HDAC6 / Q9UBN7 / histone deacetylase 6  / reaction / complex
 ENSG00000142208 AKT1 / P31749 / AKT serine/threonine kinase 1  / reaction
 ENSG00000198795 Q96K83 / ZNF521 / zinc finger protein 521  / reaction / complex
 ENSG00000100387 RBX1 / P62877 / ring-box 1  / reaction / complex
 ENSG00000170374 SP7 / Q8TDD2 / Sp7 transcription factor  / reaction / complex
 ENSG00000055130 CUL1 / Q13616 / cullin 1  / complex / reaction
 ENSG00000125398 SOX9 / P48436 / SRY-box 9  / complex / reaction
 ENSG00000103266 STUB1 / Q9UNE7 / STIP1 homology and U-box containing protein 1  / reaction / complex
 ENSG00000122691 Q15672 / TWIST1 / twist family bHLH transcription factor 1  / reaction / complex
 ENSG00000141646 SMAD4 / Q13485 / SMAD family member 4  / reaction / complex
 ENSG00000145604 SKP2 / Q13309 / S-phase kinase associated protein 2  / complex / reaction
 ENSG00000164107 HAND2 / P61296 / heart and neural crest derivatives expressed 2  / complex / reaction
 ENSG00000169083 AR / P10275 / androgen receptor  / complex / reaction
 ENSG00000068024 HDAC4 / P56524 / histone deacetylase 4  / complex / reaction
 ENSG00000178573 MAF / O75444 / MAF bZIP transcription factor  / complex / reaction
 ENSG00000113558 SKP1 / P63208 / S-phase kinase associated protein 1  / reaction / complex
 ENSG00000239306 RBM14 / Q96PK6 / RNA binding motif protein 14  / reaction / complex
 ENSG00000109670 FBXW7 / Q969H0 / F-box and WD repeat domain containing 7  / complex / reaction
 ENSG00000198742 Q9HCE7 / SMURF1 / SMAD specific E3 ubiquitin protein ligase 1  / complex / reaction
 ENSG00000018408 WWTR1 / Q9GZV5 / WW domain containing transcription regulator 1  / complex / reaction
 ENSG00000170365 SMAD1 / Q15797 / SMAD family member 1  / reaction / complex
 ENSG00000233608 Q8WVJ9 / TWIST2 / twist family bHLH transcription factor 2  / reaction / complex
 ENSG00000115415 STAT1 / P42224 / signal transducer and activator of transcription 1  / complex / reaction
 ENSG00000127124 HIVEP3 / Q5T1R4 / human immunodeficiency virus type I enhancer binding protein 3  / reaction / complex
 ENSG00000135547 HEY2 / Q9UBP5 / hes related family bHLH transcription factor with YRPW motif 2  / reaction / complex
 ENSG00000106571 GLI3 / P10071 / GLI family zinc finger 3  / reaction / complex






 

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