ENSG00000139687


Homo sapiens

Features
Gene ID: ENSG00000139687
  
Biological name :RB1
  
Synonyms : P06400 / RB1 / RB transcriptional corepressor 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 13
Strand: 1
Band: q14.2
Gene start: 48303726
Gene end: 48599436
  
Corresponding Affymetrix probe sets: 203132_at (Human Genome U133 Plus 2.0 Array)   211540_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000434702
Ensembl peptide - ENSP00000496556
Ensembl peptide - ENSP00000496005
Ensembl peptide - ENSP00000267163
NCBI entrez gene - 5925     See in Manteia.
OMIM - 614041
RefSeq - XM_011535171
RefSeq - NM_000321
RefSeq Peptide - NP_000312
swissprot - P06400
swissprot - Q92728
swissprot - A0A024RDV3
Ensembl - ENSG00000139687
  
Related genetic diseases (OMIM): 109800 - Bladder cancer, somatic, 109800
  180200 - Retinoblastoma, 180200
  182280 - Small cell cancer of the lung, somatic, 182280
  259500 - Osteosarcoma, somatic, 259500
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rb1ENSDARG00000006782Danio rerio
 RB1ENSGALG00000016997Gallus gallus
 Rb1ENSMUSG00000022105Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RBL1 / P28749 / RB transcriptional corepressor like 1ENSG0000008083927
RBL2 / Q08999 / RB transcriptional corepressor like 2ENSG0000010347927


Protein motifs (from Interpro)
Interpro ID Name
 IPR002719  Retinoblastoma-associated protein, B-box
 IPR002720  Retinoblastoma-associated protein, A-box
 IPR013763  Cyclin-like
 IPR015030  Retinoblastoma-associated protein, C-terminal
 IPR024599  Retinoblastoma-associated protein, N-terminal
 IPR028309  Retinoblastoma protein family
 IPR033057  Retinoblastoma-associated protein
 IPR036915  Cyclin-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000082 G1/S transition of mitotic cell cycle TAS
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II TAS
 biological_processGO:0001558 regulation of cell growth IEA
 biological_processGO:0001894 tissue homeostasis IEA
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006338 chromatin remodeling TAS
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated NAS
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006469 negative regulation of protein kinase activity IPI
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0007050 cell cycle arrest TAS
 biological_processGO:0007093 mitotic cell cycle checkpoint TAS
 biological_processGO:0007265 Ras protein signal transduction IEP
 biological_processGO:0007346 regulation of mitotic cell cycle IMP
 biological_processGO:0008150 biological_process ND
 biological_processGO:0008285 negative regulation of cell proliferation IEA
 biological_processGO:0010629 negative regulation of gene expression IMP
 biological_processGO:0016032 viral process IEA
 biological_processGO:0030182 neuron differentiation IEA
 biological_processGO:0030521 androgen receptor signaling pathway NAS
 biological_processGO:0031134 sister chromatid biorientation IMP
 biological_processGO:0031175 neuron projection development IEA
 biological_processGO:0034088 maintenance of mitotic sister chromatid cohesion IMP
 biological_processGO:0034349 glial cell apoptotic process IEA
 biological_processGO:0035914 skeletal muscle cell differentiation IEA
 biological_processGO:0042551 neuron maturation IEA
 biological_processGO:0043353 enucleate erythrocyte differentiation IEA
 biological_processGO:0043433 negative regulation of DNA-binding transcription factor activity TAS
 biological_processGO:0043550 regulation of lipid kinase activity IDA
 biological_processGO:0045445 myoblast differentiation IMP
 biological_processGO:0045651 positive regulation of macrophage differentiation IEA
 biological_processGO:0045786 negative regulation of cell cycle IEA
 biological_processGO:0045842 positive regulation of mitotic metaphase/anaphase transition IMP
 biological_processGO:0045879 negative regulation of smoothened signaling pathway IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated TAS
 biological_processGO:0045893 positive regulation of transcription, DNA-templated NAS
 biological_processGO:0045930 negative regulation of mitotic cell cycle IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048565 digestive tract development IEA
 biological_processGO:0048667 cell morphogenesis involved in neuron differentiation IEA
 biological_processGO:0050680 negative regulation of epithelial cell proliferation IEA
 biological_processGO:0051146 striated muscle cell differentiation IEA
 biological_processGO:0051301 cell division IEA
 biological_processGO:0051402 neuron apoptotic process IEA
 biological_processGO:0051726 regulation of cell cycle IEA
 biological_processGO:0071459 protein localization to chromosome, centromeric region IMP
 biological_processGO:0071466 cellular response to xenobiotic stimulus IEA
 biological_processGO:0071922 regulation of cohesin loading IMP
 biological_processGO:0071930 negative regulation of transcription involved in G1/S transition of mitotic cell cycle TAS
 biological_processGO:0090230 regulation of centromere complex assembly TAS
 biological_processGO:0097284 hepatocyte apoptotic process IEA
 biological_processGO:2000134 negative regulation of G1/S transition of mitotic cell cycle TAS
 biological_processGO:2000679 positive regulation of transcription regulatory region DNA binding IDA
 cellular_componentGO:0000785 chromatin TAS
 cellular_componentGO:0005575 cellular_component ND
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005667 transcription factor complex IEA
 cellular_componentGO:0005819 spindle IEA
 cellular_componentGO:0008024 cyclin/CDK positive transcription elongation factor complex IDA
 cellular_componentGO:0016514 SWI/SNF complex TAS
 cellular_componentGO:0016605 PML body IDA
 cellular_componentGO:0035189 Rb-E2F complex IDA
 molecular_functionGO:0001047 core promoter binding IDA
 molecular_functionGO:0001102 RNA polymerase II activating transcription factor binding IEA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0003677 DNA binding TAS
 molecular_functionGO:0003700 DNA-binding transcription factor activity TAS
 molecular_functionGO:0003713 transcription coactivator activity NAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008134 transcription factor binding IPI
 molecular_functionGO:0019899 enzyme binding IEA
 molecular_functionGO:0019900 kinase binding IDA
 molecular_functionGO:0031625 ubiquitin protein ligase binding IPI
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0050681 androgen receptor binding NAS
 molecular_functionGO:0051219 phosphoprotein binding IPI
 molecular_functionGO:0061676 importin-alpha family protein binding IPI
 molecular_functionGO:0097718 disordered domain specific binding IPI


Pathways (from Reactome)
Pathway description
Inhibition of replication initiation of damaged DNA by RB1/E2F1
Condensation of Prophase Chromosomes
Formation of Senescence-Associated Heterochromatin Foci (SAHF)
Oncogene Induced Senescence
Phosphorylation of proteins involved in G1/S transition by active Cyclin E:Cdk2 complexes
Cyclin E associated events during G1/S transition
Cyclin D associated events in G1
Cyclin A:Cdk2-associated events at S phase entry
RUNX2 regulates osteoblast differentiation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000243 Trigonocephaly 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000391 Thickened helices 
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 HP:0000411 Protruding ears 
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 HP:0000426 Prominent nasal bridge 
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000465 Webbed neck 
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 HP:0000470 Short neck 
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000555 Leukocoria 
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000612 Iris coloboma "A `coloboma` (HP:0000589) of the `iris` (FMA:58235)." [HPO:probinson]
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 HP:0001156 Brachydactyly 
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 HP:0001249 Mental retardation 
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001360 Holoprosencephaly "Holoprosencephaly is a structural anomaly of the brain in which the developing forebrain fails to divide into two separate hemispheres and ventricles." [gc:hpe]
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 HP:0001386 Joint swelling 
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 HP:0001428 Somatic mutation 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001824 Weight loss 
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 HP:0001909 Leukemia "A cancer of the blood and bone marrow characterized by an abnormal proliferation of leukocytes." [HPO:curators]
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 HP:0001939 Metabolism abnormality 
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 HP:0001945 Fever 
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002665 Lymphoma "A cancer originating in lymphocytes and presenting as a solid tumor of lymhpoid cells." [HPO:curators]
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 HP:0002669 Osteogenic sarcoma 
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 HP:0002756 Pathologic fracture "A pathologic fracture occurs when a bone breaks in an area that is weakened secondary to another disease process such as tumor, infection, and certain inherited bone disorders. A pathologic fracture can occur without a degree of trauma required to cause fracture in healthy bone." [HPO:curators]
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 HP:0002797 Osteolysis 
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 HP:0003155 Elevated alkaline phosphatase "Abnormally increased serum levels of `alkaline phosphatase activity` (GO:0004035)." [HPO:probinson]
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 HP:0003745 Sporadic 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0006489 Abnormality of the femoral metaphysis 
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 HP:0006491 Abnormality of the tibial metaphysis 
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 HP:0006740 Transitional cell carcinoma of the bladder 
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 HP:0007477 Abnormal dermatoglyphics "An abnormality of dermatoglyphs (fingerprints), which are present on fingers, palms, toes, and soles." [HPO:curators]
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 HP:0007862 Retinal calcification 
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 HP:0007902 Vitreous hemorrhage 
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 HP:0009601 Aplasia/Hypoplasia of the thumb "Hypoplastic/small or absent thumb." [HPO:curators]
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 HP:0009919 Retinoblastoma "A tumor of the eye originating from cells of the retina." [HPO:curators]
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 HP:0010799 Pinealoma "A `neoplasm` (MPATH:218) of the `pineal gland` (FMA:62033)." [HPO:probinson]
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 HP:0011024 Abnormality of the gastrointestinal tract "An abnormality of the `gastrointestinal tract` (FMA:71132)." [HPO:probinson]
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 HP:0011531 Vitreitis "Inflammation of the vitreous body." [HPO:probinson]
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 HP:0012254 Ewing s sarcoma "A malignant tumor of the bone which always arises in the medullary tissue, occurring more often in cylindrical bones." [HPO:probinson, pmid:17272319]
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 HP:0012531 Pain "An unpleasant sensory and emotional experience associated with actual or potential tissue damage, or described in terms of such damage." [ORCID:0000-0001-5208-3432]
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 HP:0030680 Abnormality of cardiovascular system morphology "Any structural anomaly of the heart and great vessels." []
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 HP:0045040 Abnormal lactate dehydrogenase activity 
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 HP:0100526 Neoplasia of the lungs 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000110092 CCND1 / P24385 / cyclin D1  / reaction
 ENSG00000111276 CDKN1B / P46527 / cyclin dependent kinase inhibitor 1B  / reaction
 ENSG00000124762 CDKN1A / P38936 / cyclin dependent kinase inhibitor 1A  / reaction
 ENSG00000123374 CDK2 / P24941 / cyclin dependent kinase 2  / reaction / complex
 ENSG00000135446 CDK4 / P11802 / cyclin dependent kinase 4  / reaction
 ENSG00000175305 CCNE2 / O96020 / cyclin E2  / complex / reaction
 ENSG00000112242 E2F3 / O00716 / E2F transcription factor 3  / complex / reaction
 ENSG00000114126 TFDP2 / Q14188 / transcription factor Dp-2  / reaction / complex
 ENSG00000124813 RUNX2 / Q13950 / runt related transcription factor 2  / complex / reaction
 ENSG00000007968 E2F2 / Q14209 / E2F transcription factor 2  / complex / reaction
 ENSG00000198176 TFDP1 / Q14186 / transcription factor Dp-1  / reaction / complex
 ENSG00000105173 CCNE1 / P24864 / cyclin E1  / complex / reaction
 ENSG00000101412 E2F1 / Q01094 / E2F transcription factor 1  / reaction / complex






 

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