ENSG00000111276


Homo sapiens

Features
Gene ID: ENSG00000111276
  
Biological name :CDKN1B
  
Synonyms : CDKN1B / cyclin dependent kinase inhibitor 1B / P46527
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: 1
Band: p13.1
Gene start: 12715058
Gene end: 12722371
  
Corresponding Affymetrix probe sets: 209112_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000228872
Ensembl peptide - ENSP00000407597
Ensembl peptide - ENSP00000379629
NCBI entrez gene - 1027     See in Manteia.
OMIM - 600778
RefSeq - NM_004064
RefSeq Peptide - NP_004055
swissprot - H7C2T1
swissprot - E7ES52
swissprot - P46527
swissprot - Q6I9V6
Ensembl - ENSG00000111276
  
Related genetic diseases (OMIM): 610755 - Multiple endocrine neoplasia, type IV, 610755
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cdkn1baENSDARG00000029018Danio rerio
 cdkn1bbENSDARG00000054271Danio rerio
 CDKN1BENSGALG00000022980Gallus gallus
 Cdkn1bENSMUSG00000003031Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CDKN1C / P49918 / cyclin dependent kinase inhibitor 1CENSG0000012975725
CDKN1A / P38936 / cyclin dependent kinase inhibitor 1AENSG0000012476219


Protein motifs (from Interpro)
Interpro ID Name
 IPR003175  Cyclin-dependent kinase inhibitor
 IPR029843  Cyclin-dependent kinase inhibitor 1B


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity TAS
 biological_processGO:0000082 G1/S transition of mitotic cell cycle IEA
 biological_processGO:0001666 response to hypoxia IEA
 biological_processGO:0001890 placenta development IEA
 biological_processGO:0006813 potassium ion transport IEA
 biological_processGO:0006977 DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest TAS
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0007050 cell cycle arrest IEA
 biological_processGO:0007096 regulation of exit from mitosis IEA
 biological_processGO:0007219 Notch signaling pathway IEA
 biological_processGO:0007605 sensory perception of sound IEA
 biological_processGO:0008219 cell death IEA
 biological_processGO:0008284 positive regulation of cell proliferation IEA
 biological_processGO:0008285 negative regulation of cell proliferation IEA
 biological_processGO:0009749 response to glucose IEA
 biological_processGO:0010942 positive regulation of cell death IDA
 biological_processGO:0014070 response to organic cyclic compound IEA
 biological_processGO:0016310 phosphorylation IEA
 biological_processGO:0030308 negative regulation of cell growth IDA
 biological_processGO:0031116 positive regulation of microtubule polymerization IEA
 biological_processGO:0032355 response to estradiol IEA
 biological_processGO:0033673 negative regulation of kinase activity IDA
 biological_processGO:0042127 regulation of cell proliferation IEA
 biological_processGO:0042326 negative regulation of phosphorylation IDA
 biological_processGO:0042493 response to drug IEA
 biological_processGO:0043066 negative regulation of apoptotic process IEA
 biological_processGO:0043200 response to amino acid IEA
 biological_processGO:0043434 response to peptide hormone IEA
 biological_processGO:0043491 protein kinase B signaling TAS
 biological_processGO:0045732 positive regulation of protein catabolic process IDA
 biological_processGO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity IEA
 biological_processGO:0045737 positive regulation of cyclin-dependent protein serine/threonine kinase activity IEA
 biological_processGO:0045786 negative regulation of cell cycle IMP
 biological_processGO:0045787 positive regulation of cell cycle TAS
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IDA
 biological_processGO:0045930 negative regulation of mitotic cell cycle IDA
 biological_processGO:0046686 response to cadmium ion IEA
 biological_processGO:0048102 autophagic cell death IDA
 biological_processGO:0048839 inner ear development IEA
 biological_processGO:0050680 negative regulation of epithelial cell proliferation IEA
 biological_processGO:0051271 negative regulation of cellular component movement IEA
 biological_processGO:0060770 negative regulation of epithelial cell proliferation involved in prostate gland development IEA
 biological_processGO:0071236 cellular response to antibiotic IEA
 biological_processGO:0071285 cellular response to lithium ion IDA
 biological_processGO:0071407 cellular response to organic cyclic compound IEA
 biological_processGO:0071850 mitotic cell cycle arrest IDA
 biological_processGO:0071901 negative regulation of protein serine/threonine kinase activity IEA
 biological_processGO:1902746 regulation of lens fiber cell differentiation IEA
 biological_processGO:1904030 negative regulation of cyclin-dependent protein kinase activity IMP
 biological_processGO:1904706 negative regulation of vascular smooth muscle cell proliferation IMP
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0031464 Cul4A-RING E3 ubiquitin ligase complex IDA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 molecular_functionGO:0004693 cyclin-dependent protein serine/threonine kinase activity EXP
 molecular_functionGO:0004860 protein kinase inhibitor activity IMP
 molecular_functionGO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity IEA
 molecular_functionGO:0005072 transforming growth factor beta receptor, cytoplasmic mediator activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0016301 kinase activity IEA
 molecular_functionGO:0019901 protein kinase binding IPI
 molecular_functionGO:0019903 protein phosphatase binding IPI
 molecular_functionGO:0030332 cyclin binding IPI
 molecular_functionGO:0030544 Hsp70 protein binding IEA
 molecular_functionGO:0044877 protein-containing complex binding IPI
 molecular_functionGO:0051087 chaperone binding IEA


Pathways (from Reactome)
Pathway description
SCF(Skp2)-mediated degradation of p27/p21
AKT phosphorylates targets in the cytosol
Senescence-Associated Secretory Phenotype (SASP)
DNA Damage/Telomere Stress Induced Senescence
RHO GTPases activate CIT
Constitutive Signaling by AKT1 E17K in Cancer
TP53 Regulates Transcription of Genes Involved in G1 Cell Cycle Arrest
Cyclin E associated events during G1/S transition
Cyclin D associated events in G1
p53-Dependent G1 DNA Damage Response
Cyclin A:Cdk2-associated events at S phase entry
PTK6 Regulates Cell Cycle


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
Show

 HP:0000079 Abnormality of the urinary tract 
Show

 HP:0000825 Hyperinsulinemic hypoglycemia 
Show

 HP:0000843 Hyperparathyroidism 
Show

 HP:0000845 Acromegaly "Acromegaly is a condition resulting from overproduction of growth hormone by the pituitary gland in persons with closed epiphyses, and consists chiefly in the enlargement of the distal parts of the body. The circumference of the skull increases, the nose becomes broad, the tongue becomes enlarged, the facial features become coarsened, the mandible grows excessively, and the teeth become separated. The fingers and toes grow chiefly in thickness." [HPO:curators]
Show

 HP:0000854 Thyroid adenoma 
Show

 HP:0001031 Subcutaneous lipomas 
Show

 HP:0002014 Diarrhea 
Show

 HP:0002044 Zollinger-Ellison syndrome 
Show

 HP:0002574 Episodic abdominal pain 
Show

 HP:0002893 Pituitary adenoma 
Show

 HP:0002897 Parathyroid adenoma 
Show

 HP:0003072 Hypercalcemia "A level of blood calcium that is higher than normal." [HPO:curators]
Show

 HP:0003118 Increased serum cortisol 
Show

 HP:0003165 Elevated serum parathyroid hormone (PTH) level 
Show

 HP:0004398 Peptic ulcer 
Show

 HP:0006744 Adrenocortical carcinoma 
Show

 HP:0006767 Prolactin-secreting pituitary adenoma 
Show

 HP:0006772 Multiple bilateral renal angiomyolipoma "Angiomyolipoma is a benign renal neoplasm composed of fat, vascular, and smooth muscle elements." [HPO:curators]
Show

 HP:0006780 Parathyroid carcinoma 
Show

 HP:0007449 Confetti-like hypopigmented macules 
Show

 HP:0008208 Parathyroid hyperplasia "An absolute increase in the mass of the parenchymal cells of the parathyroid gland leading to an enlargement of all four parathyroid glands." [HPO:curators]
Show

 HP:0008256 Adrenocortical adenoma "Adrenocortical adenomas are benign tumors of the adrenal cortex." [HPO:curators]
Show

 HP:0008283 Hyperinsulinemia, fasting 
Show

 HP:0008291 ACTH-producing pituitary microadenomas "Presence of microadenomas that produce adrenocorticotropic hormone (ACTH) in the pituitary gland." [HPO:curators]
Show

 HP:0010615 Angiofibromas "Angiofibroma consist of many often dilated vessels." [HPO:curators]
Show

 HP:0010783 Erythema "Redness of the skin, caused by hyperemia of the capillaries in the lower layers of the skin." [HPO:probinson]
Show

 HP:0010788 Testicular neoplasia 
Show

 HP:0011760 Pituitary growth hormone cell adenoma "A type of pituitary adenoma that produces grwoth hormone." [DDD:spark]
Show

 HP:0011761 Pituitary null cell adenoma "A type of pituitary adenoma that is of unknown cellular origin and that lacks immunocytochemical or fine structural markers. Null cell adenomas are not associated with hormone excess." [DDD:spark]
Show

 HP:0012030 Increased urinary cortisol level "Abnormally increased concentration of `cortisol` (CHEBI:17650) in the urine." [HPO:probinson]
Show

 HP:0012197 Insulinoma "A type of tumor of the pancreatic beta cells that secretes excess insulin and can result in hypoglycemia." [HPO:probinson]
Show

 HP:0012334 Extrahepatic cholestasis "Impairment of bile flow due to obstruction in large bile ducts outside the liver." [HPO:probinson]
Show

 HP:0030079 Cervix cancer "A tumor of the uterine cervix." []
Show

 HP:0030404 Glucagonoma "An endocrine tumor of the pancreas that secretes excessive amounts of glucagon." [HPO:probinson]
Show

 HP:0030445 Pulmonary carcinoid tumor "A malignant neuroendocrine tumor of the lung. According to histopathologic criteria (WHO 2004), carcinoids are divided into four groups i.e. typical and atypical carcinoids, large cell neuroendocrine carcinoma and small cell lung carcinoma." [HPO:probinson, pmid:21043816, pmid:24179657]
Show

 HP:0030688 Increased glucagon level "An elevated concentration of glucagon in the blood circulation." []
Show

 HP:0100522 Thymoma "A tumor originating from the epithelial cells of the `thymus` (FMA:9607)." [HPO:sdoelken]
Show

 HP:0100570 Carcinoid "A tumor formed from the endocrine (argentaffin) cells of the mucosal lining of a variety of organs including the stomach and intestine. These cells are from neuroectodermal origin." [HPO:sdoelkens]
Show

 HP:0100633 Esophagitis 
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000110092 CCND1 / P24385 / cyclin D1  / reaction / complex
 ENSG00000114126 TFDP2 / Q14188 / transcription factor Dp-2  / reaction
 ENSG00000145604 SKP2 / Q13309 / S-phase kinase associated protein 2  / complex / reaction
 ENSG00000123374 CDK2 / P24941 / cyclin dependent kinase 2  / complex / reaction
 ENSG00000175305 CCNE2 / O96020 / cyclin E2  / complex
 ENSG00000198176 TFDP1 / Q14186 / transcription factor Dp-1  / reaction
 ENSG00000139687 RB1 / P06400 / RB transcriptional corepressor 1  / reaction
 ENSG00000080839 RBL1 / P28749 / RB transcriptional corepressor like 1  / reaction
 ENSG00000113558 SKP1 / P63208 / S-phase kinase associated protein 1  / complex / reaction
 ENSG00000055130 CUL1 / Q13616 / cullin 1  / reaction / complex
 ENSG00000133740 E2F5 / Q15329 / E2F transcription factor 5  / reaction
 ENSG00000122966 CIT / O14578 / citron rho-interacting serine/threonine kinase  / reaction / complex
 ENSG00000173207 CKS1B / P61024 / CDC28 protein kinase regulatory subunit 1B  / reaction / complex
 ENSG00000103479 RBL2 / Q08999 / RB transcriptional corepressor like 2  / reaction
 ENSG00000105173 CCNE1 / P24864 / cyclin E1  / complex
 ENSG00000101213 PTK6 / Q13882 / protein tyrosine kinase 6  / reaction / complex
 ENSG00000205250 E2F4 / Q16254 / E2F transcription factor 4  / reaction
 ENSG00000134480 CCNH / P51946 / cyclin H  / reaction
 ENSG00000020426 MNAT1 / P51948 / MNAT1, CDK activating kinase assembly factor  / reaction
 ENSG00000105810 CDK6 / Q00534 / cyclin dependent kinase 6  / complex / reaction
 ENSG00000134058 CDK7 / P50613 / cyclin dependent kinase 7  / reaction
 ENSG00000135446 CDK4 / P11802 / cyclin dependent kinase 4  / complex / reaction
 ENSG00000142208 AKT1 / P31749 / AKT serine/threonine kinase 1  / reaction






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr