ENSG00000105810


Homo sapiens

Features
Gene ID: ENSG00000105810
  
Biological name :CDK6
  
Synonyms : CDK6 / cyclin dependent kinase 6 / Q00534
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: -1
Band: q21.2
Gene start: 92604921
Gene end: 92836594
  
Corresponding Affymetrix probe sets: 207143_at (Human Genome U133 Plus 2.0 Array)   224847_at (Human Genome U133 Plus 2.0 Array)   224848_at (Human Genome U133 Plus 2.0 Array)   224851_at (Human Genome U133 Plus 2.0 Array)   231198_at (Human Genome U133 Plus 2.0 Array)   235287_at (Human Genome U133 Plus 2.0 Array)   243000_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000265734
Ensembl peptide - ENSP00000397087
NCBI entrez gene - 1021     See in Manteia.
OMIM - 603368
RefSeq - XM_006715835
RefSeq - NM_001145306
RefSeq - NM_001259
RefSeq Peptide - NP_001250
RefSeq Peptide - NP_001138778
swissprot - Q00534
Ensembl - ENSG00000105810
  
Related genetic diseases (OMIM): 616080 - ?Microcephaly 12, primary, autosomal recessive, 616080
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cdk6ENSDARG00000070228Danio rerio
 CDK6ENSGALG00000009476Gallus gallus
 Cdk6ENSMUSG00000040274Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CDK4 / P11802 / cyclin dependent kinase 4ENSG0000013544665
CDK2 / P24941 / cyclin dependent kinase 2ENSG0000012337444
CDK3 / Q00526 / cyclin dependent kinase 3ENSG0000025050643
CDK1 / P06493 / cyclin dependent kinase 1ENSG0000017031242
CDK5 / Q00535 / cyclin dependent kinase 5ENSG0000016488541
CDK11B / cyclin dependent kinase 11BENSG0000024833338
CDK11A / Q9UQ88 / cyclin dependent kinase 11AENSG0000000812837
CDK10 / Q15131 / cyclin dependent kinase 10ENSG0000018532434


Protein motifs (from Interpro)
Interpro ID Name
 IPR000719  Protein kinase domain
 IPR008271  Serine/threonine-protein kinase, active site
 IPR011009  Protein kinase-like domain superfamily
 IPR017441  Protein kinase, ATP binding site
 IPR028788  Cyclin-dependent kinase 6


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000082 G1/S transition of mitotic cell cycle TAS
 biological_processGO:0001954 positive regulation of cell-matrix adhesion IDA
 biological_processGO:0003323 type B pancreatic cell development IDA
 biological_processGO:0006468 protein phosphorylation IDA
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0007050 cell cycle arrest TAS
 biological_processGO:0007165 signal transduction IBA
 biological_processGO:0008285 negative regulation of cell proliferation TAS
 biological_processGO:0009615 response to virus IEP
 biological_processGO:0010389 regulation of G2/M transition of mitotic cell cycle IBA
 biological_processGO:0010468 regulation of gene expression IMP
 biological_processGO:0014002 astrocyte development ISS
 biological_processGO:0016310 phosphorylation IEA
 biological_processGO:0021542 dentate gyrus development ISS
 biological_processGO:0021670 lateral ventricle development ISS
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0031658 negative regulation of cyclin-dependent protein serine/threonine kinase activity involved in G1/S transition of mitotic cell cycle TAS
 biological_processGO:0042063 gliogenesis IMP
 biological_processGO:0042127 regulation of cell proliferation IEA
 biological_processGO:0043697 cell dedifferentiation IMP
 biological_processGO:0045596 negative regulation of cell differentiation TAS
 biological_processGO:0045638 negative regulation of myeloid cell differentiation IDA
 biological_processGO:0045646 regulation of erythrocyte differentiation IMP
 biological_processGO:0045656 negative regulation of monocyte differentiation IDA
 biological_processGO:0045668 negative regulation of osteoblast differentiation IDA
 biological_processGO:0045786 negative regulation of cell cycle IDA
 biological_processGO:0048146 positive regulation of fibroblast proliferation IMP
 biological_processGO:0048699 generation of neurons ISS
 biological_processGO:0050680 negative regulation of epithelial cell proliferation IMP
 biological_processGO:0051301 cell division IEA
 biological_processGO:2000145 regulation of cell motility ISS
 biological_processGO:2000773 negative regulation of cellular senescence IDA
 cellular_componentGO:0000307 cyclin-dependent protein kinase holoenzyme complex IDA
 cellular_componentGO:0001726 ruffle IDA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005813 centrosome IDA
 cellular_componentGO:0005815 microtubule organizing center IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0042995 cell projection IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0004672 protein kinase activity IEA
 molecular_functionGO:0004674 protein serine/threonine kinase activity IEA
 molecular_functionGO:0004693 cyclin-dependent protein serine/threonine kinase activity IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IDA
 molecular_functionGO:0016301 kinase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0030332 cyclin binding IPI
 molecular_functionGO:0098770 FBXO family protein binding IPI


Pathways (from Reactome)
Pathway description
Oxidative Stress Induced Senescence
Senescence-Associated Secretory Phenotype (SASP)
Oncogene Induced Senescence
Cyclin D associated events in G1
Regulation of RUNX1 Expression and Activity


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000076 Vesicoureteral reflux "Abnormal (retrograde) movement of urine from the bladder into ureters or kidneys related to inadequacy of the valvular mechanism at the ureterovesicular junction or other causes." [HPO:curators]
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 HP:0000122 Unilateral renal agenesis 
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 HP:0000219 Thin upper lip 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000340 Sloping forehead "A form of the forehead that slopes from top to bottom in an anterior direction." [HPO:curators]
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 HP:0000582 Upslanting palpebral fissures 
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 HP:0001256 Mental retardation, mild "Mild mental retardation is defined as an intelligence quotient (IQ) in the range of 50-69." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001302 Pachygyria "A congenital abnormality of the cerebral hemisphere chacterized by unusually thick gyrations (convolutions) of the cerebral cortex." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0002119 Ventriculomegaly 
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 HP:0002282 Heterotopia 
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 HP:0003103 Abnormality of cortical bone "An abnormality of cortical bone (also known as compact bone), which forms the dense surface of bones." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0007333 Hypoplastic frontal lobes "Underdevelopment of the frontal lobe of the cerebrum." [HPO:sdoelken]
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 HP:0009879 Cortical gyral simplification "An abnormal reduction of the number and complexity of the pattern of gyrations of the cerebral cortex." [HPO:curators]
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 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000123080 CDKN2C / P42773 / cyclin dependent kinase inhibitor 2C  / complex / reaction
 ENSG00000111276 CDKN1B / P46527 / cyclin dependent kinase inhibitor 1B  / complex / reaction
 ENSG00000124762 CDKN1A / P38936 / cyclin dependent kinase inhibitor 1A  / complex / reaction
 ENSG00000110092 CCND1 / P24385 / cyclin D1  / complex / reaction
 ENSG00000147889 CDKN2A / P42771 / Q8N726 / cyclin dependent kinase inhibitor 2A  / reaction / complex
 ENSG00000067955 CBFB / Q13951 / core-binding factor beta subunit  / complex / reaction
 ENSG00000159216 RUNX1 / Q01196 / runt related transcription factor 1  / reaction / complex
 ENSG00000147883 CDKN2B / P42772 / cyclin dependent kinase inhibitor 2B  / reaction / complex
 ENSG00000129355 CDKN2D / P55273 / cyclin dependent kinase inhibitor 2D  / complex / reaction






 

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