ENSG00000094631


Homo sapiens

Features
Gene ID: ENSG00000094631
  
Biological name :HDAC6
  
Synonyms : HDAC6 / histone deacetylase 6 / Q9UBN7
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: 1
Band: p11.23
Gene start: 48801377
Gene end: 48824982
  
Corresponding Affymetrix probe sets: 206846_s_at (Human Genome U133 Plus 2.0 Array)   211722_s_at (Human Genome U133 Plus 2.0 Array)   216224_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000494447
Ensembl peptide - ENSP00000496727
Ensembl peptide - ENSP00000496207
Ensembl peptide - ENSP00000496046
Ensembl peptide - ENSP00000496032
Ensembl peptide - ENSP00000496013
Ensembl peptide - ENSP00000495932
Ensembl peptide - ENSP00000495872
Ensembl peptide - ENSP00000495151
Ensembl peptide - ENSP00000494503
Ensembl peptide - ENSP00000334061
Ensembl peptide - ENSP00000365795
Ensembl peptide - ENSP00000365804
Ensembl peptide - ENSP00000365831
Ensembl peptide - ENSP00000392815
Ensembl peptide - ENSP00000393916
Ensembl peptide - ENSP00000394377
Ensembl peptide - ENSP00000397697
Ensembl peptide - ENSP00000402189
Ensembl peptide - ENSP00000402751
Ensembl peptide - ENSP00000403370
Ensembl peptide - ENSP00000493921
Ensembl peptide - ENSP00000494007
Ensembl peptide - ENSP00000494230
Ensembl peptide - ENSP00000494293
NCBI entrez gene - 10013     See in Manteia.
OMIM - 300272
RefSeq - XM_017029187
RefSeq - NM_001321225
RefSeq - NM_001321226
RefSeq - NM_001321227
RefSeq - NM_001321228
RefSeq - NM_001321229
RefSeq - NM_001321230
RefSeq - NM_001321231
RefSeq - NM_006044
RefSeq Peptide - NP_001308157
RefSeq Peptide - NP_001308158
RefSeq Peptide - NP_001308159
RefSeq Peptide - NP_001308160
RefSeq Peptide - NP_006035
RefSeq Peptide - NP_001308154
RefSeq Peptide - NP_001308155
RefSeq Peptide - NP_001308156
swissprot - A0A024QZ26
swissprot - E7ER52
swissprot - H7C0Z9
swissprot - E7EPS2
swissprot - E7EP63
swissprot - C9JEF4
swissprot - C9J172
swissprot - A6NDI8
swissprot - Q9BRX7
swissprot - Q9UBN7
swissprot - E9PEH1
Ensembl - ENSG00000094631
  
Related genetic diseases (OMIM): 300863 - ?Chondrodysplasia with platyspondyly, distinctive brachydactyly, hydrocephaly, and microphthalmia, 300863
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hdac6ENSDARG00000008384Danio rerio
 Hdac6ENSMUSG00000031161Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
HDAC4 / P56524 / histone deacetylase 4ENSG0000006802423
HDAC10 / Q969S8 / histone deacetylase 10ENSG0000010042922
HDAC5 / Q9UQL6 / histone deacetylase 5ENSG0000010884021
HDAC9 / Q9UKV0 / histone deacetylase 9ENSG0000004805221
HDAC7 / Q8WUI4 / histone deacetylase 7ENSG0000006127320


Protein motifs (from Interpro)
Interpro ID Name
 IPR000286  Histone deacetylase family
 IPR001607  Zinc finger, UBP-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR023696  Ureohydrolase domain superfamily
 IPR023801  Histone deacetylase domain
 IPR037138  Histone deacetylase domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000209 protein polyubiquitination IEA
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006476 protein deacetylation TAS
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0006515 protein quality control for misfolded or incompletely synthesized proteins IMP
 biological_processGO:0006886 intracellular protein transport IMP
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0007026 negative regulation of microtubule depolymerization IEA
 biological_processGO:0009636 response to toxic substance IMP
 biological_processGO:0009967 positive regulation of signal transduction IMP
 biological_processGO:0010033 response to organic substance IMP
 biological_processGO:0010469 regulation of signaling receptor activity IMP
 biological_processGO:0010506 regulation of autophagy TAS
 biological_processGO:0010634 positive regulation of epithelial cell migration IMP
 biological_processGO:0010727 negative regulation of hydrogen peroxide metabolic process IC
 biological_processGO:0010870 positive regulation of receptor biosynthetic process IMP
 biological_processGO:0016241 regulation of macroautophagy IMP
 biological_processGO:0016575 histone deacetylation IEA
 biological_processGO:0031647 regulation of protein stability IMP
 biological_processGO:0032418 lysosome localization IMP
 biological_processGO:0032461 positive regulation of protein oligomerization IMP
 biological_processGO:0033138 positive regulation of peptidyl-serine phosphorylation IMP
 biological_processGO:0034983 peptidyl-lysine deacetylation IMP
 biological_processGO:0035967 cellular response to topologically incorrect protein IMP
 biological_processGO:0040029 regulation of gene expression, epigenetic IMP
 biological_processGO:0043162 ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway IEA
 biological_processGO:0043242 negative regulation of protein complex disassembly IMP
 biological_processGO:0045598 regulation of fat cell differentiation IEA
 biological_processGO:0045861 negative regulation of proteolysis IMP
 biological_processGO:0045892 negative regulation of transcription, DNA-templated ISS
 biological_processGO:0048668 collateral sprouting IEA
 biological_processGO:0051354 negative regulation of oxidoreductase activity IC
 biological_processGO:0051646 mitochondrion localization IEA
 biological_processGO:0051788 response to misfolded protein IMP
 biological_processGO:0060271 cilium assembly TAS
 biological_processGO:0060632 regulation of microtubule-based movement IC
 biological_processGO:0060765 regulation of androgen receptor signaling pathway TAS
 biological_processGO:0060997 dendritic spine morphogenesis IEA
 biological_processGO:0061734 parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization IGI
 biological_processGO:0070201 regulation of establishment of protein localization IEA
 biological_processGO:0070301 cellular response to hydrogen peroxide IMP
 biological_processGO:0070842 aggresome assembly IMP
 biological_processGO:0070845 polyubiquitinated misfolded protein transport IMP
 biological_processGO:0070846 Hsp90 deacetylation IMP
 biological_processGO:0070848 response to growth factor IMP
 biological_processGO:0070932 histone H3 deacetylation IEA
 biological_processGO:0071218 cellular response to misfolded protein IEA
 biological_processGO:0090035 positive regulation of chaperone-mediated protein complex assembly IMP
 biological_processGO:0090042 tubulin deacetylation TAS
 biological_processGO:0098779 positive regulation of mitophagy in response to mitochondrial depolarization IEA
 biological_processGO:1901300 positive regulation of hydrogen peroxide-mediated programmed cell death IDA
 biological_processGO:1903146 regulation of autophagy of mitochondrion TAS
 cellular_componentGO:0000118 histone deacetylase complex IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005737 cytoplasm TAS
 cellular_componentGO:0005771 multivesicular body TAS
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005874 microtubule IDA
 cellular_componentGO:0005875 microtubule associated complex IDA
 cellular_componentGO:0005881 cytoplasmic microtubule IEA
 cellular_componentGO:0005901 caveola IDA
 cellular_componentGO:0016234 inclusion body IDA
 cellular_componentGO:0016235 aggresome TAS
 cellular_componentGO:0030286 dynein complex IDA
 cellular_componentGO:0030424 axon ISS
 cellular_componentGO:0030425 dendrite ISS
 cellular_componentGO:0031252 cell leading edge IDA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0043005 neuron projection IEA
 cellular_componentGO:0043204 perikaryon ISS
 cellular_componentGO:0044297 cell body IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IDA
 molecular_functionGO:0001047 core promoter binding IDA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0004407 histone deacetylase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008013 beta-catenin binding IPI
 molecular_functionGO:0008017 microtubule binding IDA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0019899 enzyme binding ISS
 molecular_functionGO:0031593 polyubiquitin modification-dependent protein binding IDA
 molecular_functionGO:0031625 ubiquitin protein ligase binding IPI
 molecular_functionGO:0032041 NAD-dependent histone deacetylase activity (H3-K14 specific) IEA
 molecular_functionGO:0042826 histone deacetylase binding IPI
 molecular_functionGO:0042903 tubulin deacetylase activity TAS
 molecular_functionGO:0043014 alpha-tubulin binding IDA
 molecular_functionGO:0043130 ubiquitin binding IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0048156 tau protein binding IDA
 molecular_functionGO:0048487 beta-tubulin binding IEA
 molecular_functionGO:0051787 misfolded protein binding EXP
 molecular_functionGO:0051879 Hsp90 protein binding IDA
 molecular_functionGO:0070840 dynein complex binding IDA


Pathways (from Reactome)
Pathway description
NOTCH1 Intracellular Domain Regulates Transcription
Constitutive Signaling by NOTCH1 PEST Domain Mutants
Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants
HSF1 activation
Cilium Assembly
Transcriptional regulation by RUNX2
RUNX2 regulates osteoblast differentiation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000154 Wide mouth "Abnormally wide mouth." [HPO:curators]
Show

 HP:0000238 Hydrocephalus 
Show

 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
Show

 HP:0000322 Short philtrum 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
Show

 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
Show

 HP:0000457 Flat nose 
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
Show

 HP:0000878 11 pairs of ribs 
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 HP:0000883 Thin ribs 
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 HP:0000926 Platyspondyly 
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 HP:0000962 Hyperkeratosis "Hyperkeratosis is thickening of the outer layer of the skin, the stratum corneum, which is composed of large, polyhedral, plate-like envelopes filled with keratin which are the dead cells that have migrated up from the stratum granulosum." [HPO:curators]
Show

 HP:0001256 Mental retardation, mild "Mild mental retardation is defined as an intelligence quotient (IQ) in the range of 50-69." [HPO:curators]
Show

 HP:0001321 Cerebellar hypoplasia 
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 HP:0001423 X-linked dominant inheritance "A mode of inheritance that is observed for dominant traits related to a gene encoded on the X chromosome. In the context of medical genetics, X-linked dominant disorders tend to manifest very severely in affected males. The severity of manifestation in females may depend on the degree of skewed X inactivation." [HPO:curators]
Show

 HP:0001511 Intrauterine growth retardation 
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 HP:0001522 Death in infancy 
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 HP:0001773 Short, broad feet "Abnormally short and wide feet." [HPO:curators]
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002866 Hypoplastic iliac wings 
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 HP:0003196 Nasal hypoplasia "Underdevelopment of the `nose` (FMA:46472)." [HPO:probinson]
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 HP:0004279 Hypoplastic hand 
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 HP:0004331 Decreased skull ossification "A reduction in the magnitude or amount of ossification of the skull." [HPO:curators]
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 HP:0005871 Metaphyseal chondrodysplasia 
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 HP:0006028 Metaphyseal cupping of metacarpals "Metaphyseal cupping affecting the metacarpal bones." [HPO:curators]
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 HP:0006208 Metaphyseal cupping of proximal phalanges "Metaphyseal cupping affecting the proximal phalanges." [HPO:curators]
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 HP:0006402 Distal shortening of limbs 
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 HP:0008364 Abnormality of the calcaneus 
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 HP:0008905 Rhizomelic short stature 
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 HP:0012789 Hypoplasia of the calcaneus "Underdevelopment of the heel bone." [HPO:probinson]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000165280 VCP / P55072 / valosin containing protein  / complex
 ENSG00000124813 RUNX2 / Q13950 / runt related transcription factor 2  / reaction / complex






 

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