ENSDARG00000037178


Danio rerio

Features
Gene ID: ENSDARG00000037178
  
Biological name :zic2b
  
Synonyms : zic2b / zic family member 2 (odd-paired homolog, Drosophila) b
  
Possible biological names infered from orthology : O95409 / ZIC2 / Zic family member 2 / zinc finger protein of the cerebellum 2
  
Species: Danio rerio
  
Chr. number: 1
Strand: 1
Band:
Gene start: 29831759
Gene end: 29860895
  
Corresponding Affymetrix probe sets: Dr.10614.1.A1_at (Zebrafish Array)   Dr.10689.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000054065
NCBI entrez gene - 570746     See in Manteia.
RefSeq - NM_001001820
RefSeq Peptide - NP_001001820
swissprot - Q9DE40
ZFIN ID - ZDB-GENE-030219-92
Ensembl - ENSDARG00000037178
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ZIC2ENSGALG00000041083Gallus gallus
 ZIC2ENSG00000043355Homo sapiens
 Zic2ENSMUSG00000061524Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zic2a / zic family member 2 (odd-paired homolog, Drosophila), a / ZIC2* / O95409* / Zic family member 2* / zinc finger protein of the cerebellum 2*ENSDARG0000001555482
zic1 / zic family member 1 (odd-paired homolog, Drosophila)ENSDARG0000001556766
zic3 / zic family member 3 heterotaxy 1 (odd-paired homolog, Drosophila) / Q62521* / O60481* / Zic family member 3* / zinc finger protein of the cerebellum 3*ENSDARG0000007149762
zic4 / zic family member 4 / Q61467* / Q8N9L1* / zinc finger protein of the cerebellum 4*ENSDARG0000003130755
zic5 / zic family member 5 (odd-paired homolog, Drosophila) / Q96T25* / Zic family member 5* / zinc finger protein of the cerebellum 5*ENSDARG0000001602251
zic6 / zic family member 6ENSDARG0000007149643
gli3 / GLI family zinc finger 3ENSDARG0000005213131
gli2a / GLI family zinc finger 2aENSDARG0000002564130
gli2b / GLI family zinc finger 2b / GLI2* / P10070* / GLI family zinc finger 2*ENSDARG0000002088429
gli1 / GLI family zinc finger 1 / P08151*ENSDARG0000010124427
glis3 / GLIS family zinc finger 3 / Q6XP49* / Q8NEA6* / Zinc finger protein GLIS3 *ENSDARG0000006972624
glis1b / GLIS family zinc finger 1b / GLIS1* / Q8K1M4* / Q8NBF1* / GLIS family zinc finger 1* / Zinc finger protein GLIS1 *ENSDARG0000002793322
glis1a / GLIS family zinc finger 1a / GLIS1* / Q8K1M4* / Q8NBF1* / GLIS family zinc finger 1* / Zinc finger protein GLIS1 *ENSDARG0000006858022
glis2b / GLIS family zinc finger 2b / GLIS2* / Q8VDL9* / Q9BZE0* / GLIS family zinc finger 2* / Zinc finger protein GLIS2 *ENSDARG0000010023221
si:dkey-149i17.7ENSDARG0000009468421
glis2a / GLIS family zinc finger 2a / GLIS2* / Q9BZE0* / GLIS family zinc finger 2*ENSDARG0000007838820


Protein motifs (from Interpro)
Interpro ID Name
 IPR013087  Zinc finger C2H2-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0014032 neural crest cell development IMP
 biological_processGO:0030902 hindbrain development IGI
 biological_processGO:0048385 regulation of retinoic acid receptor signaling pathway IGI
 biological_processGO:0048703 embryonic viscerocranium morphogenesis IMP
 molecular_functionGO:0003676 nucleic acid binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000032 hypothalamus hypothalamus cellular quality , abnormal
Show

 ZFA:0000458 ventral thalamus ventral thalamus cellular quality , abnormal
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 ZFA:0001114 head head has fewer parts of type xanthoblast , abnormal
head has fewer parts of type melanoblast , abnormal
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 ZFA:0001115 trunk trunk has fewer parts of type xanthoblast , abnormal
trunk has fewer parts of type melanoblast , abnormal
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 ZFA:0001194 cranial neural crest cranial neural crest mislocalised dorsally , abnormal
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 ZFA:0001273 ventral mandibular arch ventral mandibular arch shortened , abnormal
Show

 ZFA:0001460 pharyngeal arch cartilage pharyngeal arch cartilage hypoplastic , abnormal
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 ZFA:0001606 pharyngeal arch 3 pharyngeal arch 3 decreased size , abnormal
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 ZFA:0001607 pharyngeal arch 4 pharyngeal arch 4 decreased size , abnormal
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 ZFA:0001611 pharyngeal arch 2 pharyngeal arch 2 shortened , abnormal
pharyngeal arch 2 decreased size , abnormal
Show

 ZFA:0001612 pharyngeal arch 1 pharyngeal arch 1 decreased size , abnormal
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 ZFA:0009165 neural crest cell neural crest cell cellular quality , abnormal
Show

 ZFA:0009249 melanoblast melanoblast mislocalised , abnormal
melanoblast aggregated , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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