ENSDARG00000016022


Danio rerio

Features
Gene ID: ENSDARG00000016022
  
Biological name :zic5
  
Synonyms : zic5 / zic family member 5 (odd-paired homolog, Drosophila)
  
Possible biological names infered from orthology : Q96T25 / Zic family member 5 / zinc finger protein of the cerebellum 5
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 31274108
Gene end: 31314324
  
Corresponding Affymetrix probe sets: DrAffx.2.4.S1_at (Zebrafish Array)   NM_205727_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000024199
NCBI entrez gene - 403041     See in Manteia.
RefSeq - NM_205727
RefSeq Peptide - NP_991290
swissprot - Q6VUB8
ZFIN ID - ZDB-GENE-040622-1
Ensembl - ENSDARG00000016022
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ZIC5ENSGALG00000034197Gallus gallus
 ZIC5ENSG00000139800Homo sapiens
 Zic5ENSMUSG00000041703Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zic4 / zic family member 4 / Q61467* / Q8N9L1* / zinc finger protein of the cerebellum 4*ENSDARG0000003130758
zic1 / zic family member 1 (odd-paired homolog, Drosophila)ENSDARG0000001556746
zic2a / zic family member 2 (odd-paired homolog, Drosophila), a / ZIC2* / O95409* / Zic family member 2* / zinc finger protein of the cerebellum 2*ENSDARG0000001555446
zic3 / zic family member 3 heterotaxy 1 (odd-paired homolog, Drosophila) / Q62521* / O60481* / Zic family member 3* / zinc finger protein of the cerebellum 3*ENSDARG0000007149745
zic2b / zic family member 2 (odd-paired homolog, Drosophila) b / ZIC2* / O95409* / Zic family member 2* / zinc finger protein of the cerebellum 2*ENSDARG0000003717844
zic6 / zic family member 6ENSDARG0000007149642
gli3 / GLI family zinc finger 3ENSDARG0000005213129
gli2a / GLI family zinc finger 2aENSDARG0000002564129
gli2b / GLI family zinc finger 2b / GLI2* / P10070* / GLI family zinc finger 2*ENSDARG0000002088425
gli1 / GLI family zinc finger 1 / P08151*ENSDARG0000010124425
glis3 / GLIS family zinc finger 3 / Q6XP49* / Q8NEA6* / Zinc finger protein GLIS3 *ENSDARG0000006972623
glis2b / GLIS family zinc finger 2b / GLIS2* / Q8VDL9* / Q9BZE0* / GLIS family zinc finger 2* / Zinc finger protein GLIS2 *ENSDARG0000010023220
glis1b / GLIS family zinc finger 1b / GLIS1* / Q8K1M4* / Q8NBF1* / GLIS family zinc finger 1* / Zinc finger protein GLIS1 *ENSDARG0000002793320
glis1a / GLIS family zinc finger 1a / GLIS1* / Q8K1M4* / Q8NBF1* / GLIS family zinc finger 1* / Zinc finger protein GLIS1 *ENSDARG0000006858019
si:dkey-149i17.7ENSDARG0000009468418
glis2a / GLIS family zinc finger 2a / GLIS2* / Q9BZE0* / GLIS family zinc finger 2*ENSDARG0000007838818


Protein motifs (from Interpro)
Interpro ID Name
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001841 neural tube formation IGI
 biological_processGO:0030901 midbrain development IMP
 biological_processGO:0033278 cell proliferation in midbrain IMP
 biological_processGO:0042127 regulation of cell proliferation IMP
 biological_processGO:0050767 regulation of neurogenesis IMP
 biological_processGO:0060070 canonical Wnt signaling pathway IMP
 molecular_functionGO:0003676 nucleic acid binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000029 hindbrain hindbrain cell proliferation in hindbrain ventricular zone increased occurrence , abnormal
hindbrain malformed , abnormal
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 ZFA:0000110 fourth ventricle fourth ventricle malformed , abnormal
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 ZFA:0000128 midbrain midbrain malformed , abnormal
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 ZFA:0000159 tectal ventricle tectal ventricle malformed , abnormal
tectal ventricle decreased size , abnormal
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 ZFA:0001357 alar plate midbrain region alar plate midbrain region physical object quality , abnormal
alar plate midbrain region apical junction complex patchy , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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