| ZFA:0000008 | brain | brain quality , abnormal |
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| ZFA:0000012 | central nervous system | central nervous system has fewer parts of type white matter , abnormal |
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| ZFA:0000022 | floor plate | floor plate quality , abnormal
floor plate decreased size , abnormal |
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| ZFA:0000059 | postoptic commissure | postoptic commissure aplastic , abnormal |
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| ZFA:0000095 | pharyngeal arch 3-7 skeleton | pharyngeal arch 3-7 skeleton quality , abnormal
pharyngeal arch 3-7 skeleton morphology , abnormal |
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| ZFA:0000107 | eye | eye quality , abnormal
eye decreased distance eye , abnormal
eye mislocalised medially , abnormal |
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| ZFA:0000155 | somite | somite U-shaped , abnormal |
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| ZFA:0000206 | facial nerve motor nucleus | facial nerve motor nucleus absent , abnormal |
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| ZFA:0000282 | sensory system | sensory system quality , abnormal |
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| ZFA:0000387 | motor nucleus of vagal nerve | motor nucleus of vagal nerve absent , abnormal |
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| ZFA:0000396 | nervous system | nervous system quality , abnormal |
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| ZFA:0000556 | optic chiasm | optic chiasm malformed , abnormal |
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| ZFA:0000668 | cranial nerve IX | cranial nerve IX absent , abnormal |
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| ZFA:0000713 | abducens motor nucleus | abducens motor nucleus absent , abnormal |
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| ZFA:0000938 | central canal | central canal quality , abnormal
central canal morphology , abnormal |
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| ZFA:0001086 | muscle pioneer | muscle pioneer absent , abnormal |
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| ZFA:0001094 | whole organism | whole organism shape , abnormal
whole organism lethal (sensu genetics) , abnormal
whole organism viability , abnormal
whole organism curved ventral , abnormal |
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| ZFA:0001117 | post-vent region | post-vent region curved , abnormal
post-vent region curved ventral , abnormal |
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| ZFA:0001135 | neural tube | neural tube quality , abnormal |
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| ZFA:0001198 | adenohypophyseal placode | adenohypophyseal placode decreased size , abnormal |
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| ZFA:0001239 | ceratobranchial 5 bone | ceratobranchial 5 bone decreased length , abnormal
ceratobranchial 5 bone has fewer parts of type ceratobranchial 5 tooth , abnormal |
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| ZFA:0001256 | lateral floor plate | lateral floor plate composition , abnormal |
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| ZFA:0001282 | adenohypophysis | adenohypophysis physical object quality , abnormal |
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| ZFA:0001365 | trigeminal motor nucleus | trigeminal motor nucleus absent , abnormal |
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| ZFA:0001405 | ethmoid cartilage | ethmoid cartilage hypoplastic , abnormal
ethmoid cartilage decreased width , abnormal |
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| ZFA:0001423 | parachordal cartilage | parachordal cartilage fused with parachordal cartilage , abnormal |
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| ZFA:0001424 | chondrocranium | chondrocranium morphology , abnormal |
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| ZFA:0001507 | trabecula cranii | trabecula cranii fused with trabecula cranii , abnormal |
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| ZFA:0005730 | cranial motor neuron | cranial motor neuron absent , abnormal |
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| ZFA:0009003 | cranial neural crest cell | cranial neural crest cell mislocalised ventrally , abnormal |
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| ZFA:0009117 | fast muscle cell | fast muscle cell decreased amount , abnormal |
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| ZFA:0009155 | somatotropin secreting cell | somatotropin secreting cell decreased amount , abnormal |
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| ZFA:0009204 | prolactin secreting cell | prolactin secreting cell decreased amount , abnormal |
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| ZFA:0009216 | adrenocorticotropic hormone secreting cell | adrenocorticotropic hormone secreting cell decreased amount , abnormal |
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| ZFA:0009244 | primary motor neuron | primary motor neuron axon misrouted , abnormal |
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| ZFA:0009247 | secondary motor neuron | secondary motor neuron axon misrouted , abnormal |
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| ZFA:0009310 | retinal ganglion cell | retinal ganglion cell axon misrouted , abnormal
retinal ganglion cell axon ipsilateral to eye , abnormal
retinal ganglion cell axon displaced to diencephalon , abnormal |
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