ENSDARG00000015567


Danio rerio

Features
Gene ID: ENSDARG00000015567
  
Biological name :zic1
  
Synonyms : zic1 / zic family member 1 (odd-paired homolog, Drosophila)
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 24
Strand: -1
Band:
Gene start: 4970580
Gene end: 4973765
  
Corresponding Affymetrix probe sets: Dr.6760.1.S1_at (Zebrafish Array)   NM_130933_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000106790
NCBI entrez gene - 30096     See in Manteia.
RefSeq - NM_130933
RefSeq Peptide - NP_571008
swissprot - O93311
ZFIN ID - ZDB-GENE-000208-4
Ensembl - ENSDARG00000015567
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ZIC1ENSGALG00000040532Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zic2a / zic family member 2 (odd-paired homolog, Drosophila), a / ZIC2* / O95409* / Zic family member 2* / zinc finger protein of the cerebellum 2*ENSDARG0000001555473
zic3 / zic family member 3 heterotaxy 1 (odd-paired homolog, Drosophila) / Q62521* / O60481* / Zic family member 3* / zinc finger protein of the cerebellum 3*ENSDARG0000007149768
zic2b / zic family member 2 (odd-paired homolog, Drosophila) b / ZIC2* / O95409* / Zic family member 2* / zinc finger protein of the cerebellum 2*ENSDARG0000003717864
zic4 / zic family member 4 / Q61467* / Q8N9L1* / zinc finger protein of the cerebellum 4*ENSDARG0000003130755
zic5 / zic family member 5 (odd-paired homolog, Drosophila) / Q96T25* / Zic family member 5* / zinc finger protein of the cerebellum 5*ENSDARG0000001602252
zic6 / zic family member 6ENSDARG0000007149643
gli2a / GLI family zinc finger 2aENSDARG0000002564129
gli2b / GLI family zinc finger 2b / GLI2* / P10070* / GLI family zinc finger 2*ENSDARG0000002088429
gli3 / GLI family zinc finger 3ENSDARG0000005213129
gli1 / GLI family zinc finger 1 / P08151*ENSDARG0000010124428
glis3 / GLIS family zinc finger 3 / Q6XP49* / Q8NEA6* / Zinc finger protein GLIS3 *ENSDARG0000006972623
glis1b / GLIS family zinc finger 1b / GLIS1* / Q8K1M4* / Q8NBF1* / GLIS family zinc finger 1* / Zinc finger protein GLIS1 *ENSDARG0000002793322
si:dkey-149i17.7ENSDARG0000009468421
glis2b / GLIS family zinc finger 2b / GLIS2* / Q8VDL9* / Q9BZE0* / GLIS family zinc finger 2* / Zinc finger protein GLIS2 *ENSDARG0000010023221
glis1a / GLIS family zinc finger 1a / GLIS1* / Q8K1M4* / Q8NBF1* / GLIS family zinc finger 1* / Zinc finger protein GLIS1 *ENSDARG0000006858020
glis2a / GLIS family zinc finger 2a / GLIS2* / Q9BZE0* / GLIS family zinc finger 2*ENSDARG0000007838819


Protein motifs (from Interpro)
Interpro ID Name
 IPR013087  Zinc finger C2H2-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007420 brain development IEP
 biological_processGO:0021534 cell proliferation in hindbrain IGI
 biological_processGO:0021592 fourth ventricle development IMP
 biological_processGO:0030902 hindbrain development IMP
 biological_processGO:0048853 forebrain morphogenesis IMP
 biological_processGO:0060059 embryonic retina morphogenesis in camera-type eye IMP
 molecular_functionGO:0003676 nucleic acid binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000050 optic vesicle optic vesicle wholly ventralized , abnormal
Show

 ZFA:0000101 diencephalon diencephalon physical object quality , abnormal
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 ZFA:0000109 forebrain forebrain physical object quality , abnormal
Show

 ZFA:0000137 optic stalk optic stalk malformed , abnormal
Show

 ZFA:0000144 retinal pigmented epithelium retinal pigmented epithelium mislocalised , abnormal
Show

 ZFA:0000152 retina retina physical object quality , abnormal
retina malformed , abnormal
Show

 ZFA:0001202 optic cup optic cup physical object quality , abnormal
Show

 ZFA:0001284 optic fissure optic fissure closure incomplete , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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