ENSG00000111676


Homo sapiens

Features
Gene ID: ENSG00000111676
  
Biological name :ATN1
  
Synonyms : ATN1 / atrophin 1 / P54259
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: 1
Band: p13.31
Gene start: 6924463
Gene end: 6942321
  
Corresponding Affymetrix probe sets: 1555754_s_at (Human Genome U133 Plus 2.0 Array)   208871_at (Human Genome U133 Plus 2.0 Array)   211076_x_at (Human Genome U133 Plus 2.0 Array)   40489_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000349076
Ensembl peptide - ENSP00000379915
NCBI entrez gene - 1822     See in Manteia.
OMIM - 607462
RefSeq - NM_001007026
RefSeq - NM_001940
RefSeq Peptide - NP_001007027
RefSeq Peptide - NP_001931
swissprot - P54259
Ensembl - ENSG00000111676
  
Related genetic diseases (OMIM): 125370 - Dentatorubro-pallidoluysian atrophy, 125370
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 atn1ENSDARG00000092067Danio rerio
 ATN1ENSGALG00000014554Gallus gallus
 Atn1ENSMUSG00000004263Mus musculus
 O35126ENSMUSG00000107478Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RERE / Q9P2R6 / arginine-glutamic acid dipeptide repeatsENSG0000014259943
MTA1 / Q13330 / metastasis associated 1ENSG000001829797
MTA3 / Q9BTC8 / metastasis associated 1 family member 3ENSG000000579355
MTA2 / O94776 / metastasis associated 1 family member 2ENSG000001494805


Protein motifs (from Interpro)
Interpro ID Name
 IPR002951  Atrophin-like
 IPR008917  Transcription factor, Skn-1-like, DNA-binding domain superfamily
 IPR017993  Atrophin-1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IDA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007417 central nervous system development TAS
 biological_processGO:0051402 neuron apoptotic process IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005737 cytoplasm TAS
 cellular_componentGO:0016363 nuclear matrix IDA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003714 transcription corepressor activity IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0019904 protein domain specific binding IPI


Pathways (from Reactome)
Pathway description
Regulation of PTEN gene transcription


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000597 Ophthalmoparesis "Ophthalmoplegia is a paralysis or weakness of one or more of the muscles that control eye movement." [HPO:curators]
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000643 Blepharospasm "An involuntary recurrent spasm of both eyelids." [HPO:curators]
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 HP:0000726 Dementia 
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 HP:0001138 Optic neuropathy 
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 HP:0001152 Saccadic smooth pursuit 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001265 Hyporeflexia 
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 HP:0001266 Choreoathetosis 
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 HP:0001310 Dysmetria 
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 HP:0001336 Myoclonus "Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements." [HPO:curators]
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 HP:0002066 Gait ataxia "Impairment of the ability to coordinate the movements required for normal walking." [HPO:curators]
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 HP:0002070 Limb ataxia 
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 HP:0002072 Chorea "Chorea (Greek for dance ) refers to widespread arrhythmic involuntary movements of a forcible, jerky and restless fashion." [HPO:curators]
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 HP:0002073 Progressive cerebellar ataxia 
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 HP:0002075 Dysdiadochokinesis "An inability to perform rapidly alternating movements, such as rhythmically tapping the fingers on the knee, generally related to a cerebellar lesion." [HPO:curators]
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 HP:0002078 Truncal ataxia 
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 HP:0002345 Action tremor "A tremor present when the limbs are active, either when outstretched in a certain position or throughout a voluntary movement." [HPO:curators]
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 HP:0002354 Memory impairment 
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 HP:0003743 Genetic anticipation 
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 HP:0007047 Atrophy of the dentate nucleus 
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 HP:0007256 Mild pyramidal signs 
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 HP:0010831 Impaired proprioception "A loss or impairment of the sensation of the relative position of parts of the body and joint position." [HPO:probinson]
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 HP:0010867 Dyssynergia "A type of `ataxia` (HP:0001251) characterized by the impairment of the ability to smoothly perform the elements of a voluntary movement in the appropriate order and speed. With dyssynergia, a voluntary movement appears broken down into its component parts." [HPO:probinson]
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 HP:0010878 Fetal cystic hygroma "The presence during the prenatal period of a cystic mass with multiple septa with multiple, asymmetric, thin-walled cysts near the posterior aspect of the neck. Fetal cystic hygroma can be defined as nuchal translucency with or without septations measuring greater than 3.0 mm." [emedicine:402757, HPO:probinson]
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 HP:0012048 Oromandibular dystonia "A kind of focal dystonia characterized by forceful contractions of the face, jaw, and/or tongue causing difficulty in opening and closing the mouth and often affecting chewing and speech." [HPO:probinson]
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 HP:0030890 Hyperintensity of cerebral white matter on MRI "A brighter than expected signal on magnetic resonance imaging emanating from the cerebral white matter." [PMID:15576652]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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