ENSG00000115486


Homo sapiens

Features
Gene ID: ENSG00000115486
  
Biological name :GGCX
  
Synonyms : gamma-glutamyl carboxylase / GGCX / P38435
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: p11.2
Gene start: 85544723
Gene end: 85561547
  
Corresponding Affymetrix probe sets: 205351_at (Human Genome U133 Plus 2.0 Array)   213705_at (Human Genome U133 Plus 2.0 Array)   214005_at (Human Genome U133 Plus 2.0 Array)   214006_s_at (Human Genome U133 Plus 2.0 Array)   235413_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000389426
Ensembl peptide - ENSP00000400384
Ensembl peptide - ENSP00000408045
Ensembl peptide - ENSP00000233838
Ensembl peptide - ENSP00000390748
NCBI entrez gene - 2677     See in Manteia.
OMIM - 137167
RefSeq - XM_017003803
RefSeq - NM_000821
RefSeq - NM_001142269
RefSeq - XM_005264259
RefSeq - XM_011532764
RefSeq - XM_011532765
RefSeq Peptide - NP_001135741
RefSeq Peptide - NP_000812
swissprot - F8WCF0
swissprot - F8WDU9
swissprot - P38435
swissprot - F8WB98
Ensembl - ENSG00000115486
  
Related genetic diseases (OMIM): 277450 - Vitamin K-dependent clotting factors, combined deficiency of, 1, 277450
  610842 - Pseudoxanthoma elasticum-like disorder with multiple coagulation factor deficiency, 610842
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ggcxENSDARG00000067805Danio rerio
 GgcxENSMUSG00000053460Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007782  Vitamin K-dependent gamma-carboxylase
 IPR011020  HTTM
 IPR011051  RmlC-like cupin domain superfamily
 IPR014710  RmlC-like jelly roll fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006464 cellular protein modification process TAS
 biological_processGO:0007596 blood coagulation TAS
 biological_processGO:0017187 peptidyl-glutamic acid carboxylation IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane TAS
 cellular_componentGO:0016020 membrane TAS
 cellular_componentGO:0016021 integral component of membrane TAS
 molecular_functionGO:0008488 gamma-glutamyl carboxylase activity IEA
 molecular_functionGO:0016829 lyase activity IEA


Pathways (from Reactome)
Pathway description
Gamma-carboxylation of protein precursors


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000421 Epistaxis 
Show

 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
Show

 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
Show

 HP:0000587 Abnormality of the optic nerve "Abnormality of the optic nerve (also known as cranial nerve II), which transmits visual information from the retina to the brain." [HPO:curators]
Show

 HP:0000662 Night blindness 
Show

 HP:0000973 Cutis laxa 
Show

 HP:0000978 Ecchymoses 
Show

 HP:0001102 Angioid streaks 
Show

 HP:0001582 Loose, redundant skin 
Show

 HP:0001892 Bleeding diathesis "An abnormal susceptibility to bleeding because of a defect in coagulation." [HPO:curators]
Show

 HP:0001928 Abnormality of coagulation 
Show

 HP:0002621 Atherosclerosis "A condition characterized by patchy atheromas or atherosclerotic plaques which develop in the walls of medium-sized and large arteries and can lead to arterial stenosis with reduced or blocked blood flow." [HPO:curators]
Show

 HP:0003196 Nasal hypoplasia "Underdevelopment of the `nose` (FMA:46472)." [HPO:probinson]
Show

 HP:0003645 Prolonged partial thromboplastin time 
Show

 HP:0004944 Cerebral aneurysm "The presence of a localized dilatation or ballooning of a cerebral artery." [HPO:curators]
Show

 HP:0005261 Joint hemorrhage 
Show

 HP:0007522 Increased number of skin folds 
Show

 HP:0007843 Attenuation of retinal blood vessels 
Show

 HP:0007980 Absent retinal pigment epithelium 
Show

 HP:0008169 Factor VII deficiency 
Show

 HP:0008321 Factor X deficiency 
Show

 HP:0009882 Hypoplasia of the distal phalanges of the hand 
Show

 HP:0010655 Stippling of the epiphyses "The presence of abnormal punctate (speckled, dot-like) calcifications in the epiphyses (FMA:24012)." [HPO:curators]
Show

 HP:0011858 Reduced factor IX activity "Decreased activity of `coagulation factor IX` (PR:000007303). Factor IX, which itself is activated by factor Xa or factor VIIa to form factor IXa, activates factor X into factor Xa." [HPO:probinson]
Show

 HP:0012201 Reduced prothrombin activity "Decreased activity of coagulation factor II, which is also known as prothrombin." [HPO:probinson]
Show

 HP:0200034 skin papules "A circumscribed, solid elevation of skin with no visible fluid, varying in size from a pinhead to less than 10mm in diameter at the widest point." [HPO:SKOEHLER]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000115718 PROC / P04070 / protein C, inactivator of coagulation factors Va and VIIIa  / reaction
 ENSG00000242252 BGLAP / P02818 / bone gamma-carboxyglutamate protein  / reaction
 ENSG00000180210 F2 / P00734 / coagulation factor II, thrombin  / reaction
 ENSG00000057593 F7 / P08709 / coagulation factor VII  / reaction
 ENSG00000101981 F9 / P00740 / coagulation factor IX  / reaction
 ENSG00000126231 PROZ / P22891 / protein Z, vitamin K dependent plasma glycoprotein  / reaction
 ENSG00000126218 F10 / P00742 / coagulation factor X  / reaction
 ENSG00000184500 PROS1 / P07225 / protein S  / reaction
 ENSG00000183087 GAS6 / Q14393 / growth arrest specific 6  / reaction






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr