ENSG00000116017


Homo sapiens

Features
Gene ID: ENSG00000116017
  
Biological name :ARID3A
  
Synonyms : ARID3A / AT-rich interaction domain 3A / Q99856
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: 1
Band: p13.3
Gene start: 925781
Gene end: 975934
  
Corresponding Affymetrix probe sets: 205865_at (Human Genome U133 Plus 2.0 Array)   228008_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000263620
Ensembl peptide - ENSP00000440911
Ensembl peptide - ENSP00000464969
NCBI entrez gene - 1820     See in Manteia.
OMIM - 603265
RefSeq - XM_017026447
RefSeq - XM_005259513
RefSeq - XM_005259514
RefSeq - XM_017026445
RefSeq - XM_017026446
RefSeq - NM_005224
RefSeq Peptide - NP_005215
swissprot - K7EJ04
swissprot - H0YFY1
swissprot - Q99856
Ensembl - ENSG00000116017
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 arid3aENSDARG00000070843Danio rerio
 ARID3AENSGALG00000026231Gallus gallus
 Arid3aENSMUSG00000019564Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ARID3B / Q8IVW6 / AT-rich interaction domain 3BENSG0000017936142
A6NKF2 / ARID3C / AT-rich interaction domain 3CENSG0000020514336
ARID1B / Q8NFD5 / AT-rich interaction domain 1BENSG0000004961824
ARID1A / O14497 / AT-rich interaction domain 1AENSG0000011771321


Protein motifs (from Interpro)
Interpro ID Name
 IPR001606  ARID DNA-binding domain
 IPR023334  REKLES domain
 IPR036431  ARID DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0006977 DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest TAS
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 cellular_componentGO:0045121 membrane raft IDA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0042803 protein homodimerization activity IEA


Pathways (from Reactome)
Pathway description
TP53 Regulates Transcription of Genes Involved in G1 Cell Cycle Arrest


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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