ENSG00000117595


Homo sapiens

Features
Gene ID: ENSG00000117595
  
Biological name :IRF6
  
Synonyms : interferon regulatory factor 6 / IRF6 / O14896
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: q32.2
Gene start: 209785623
Gene end: 209806175
  
Corresponding Affymetrix probe sets: 1552477_a_at (Human Genome U133 Plus 2.0 Array)   1552478_a_at (Human Genome U133 Plus 2.0 Array)   202597_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000403855
Ensembl peptide - ENSP00000496669
Ensembl peptide - ENSP00000440532
Ensembl peptide - ENSP00000355988
NCBI entrez gene - 3664     See in Manteia.
OMIM - 607199
RefSeq - NM_001206696
RefSeq - NM_006147
RefSeq Peptide - NP_001193625
RefSeq Peptide - NP_006138
swissprot - O14896
swissprot - G0Z349
swissprot - B1AJU4
Ensembl - ENSG00000117595
  
Related genetic diseases (OMIM): 119300 - van der Woude syndrome, 119300
  119500 - Popliteal pterygium syndrome 1, 119500
  608864 - {Orofacial cleft 6}, 608864

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 irf6ENSDARG00000101986Danio rerio
 IRF6ENSGALG00000001405Gallus gallus
 Irf6ENSMUSG00000026638Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
IRF5 / Q13568 / interferon regulatory factor 5ENSG0000012860451
IRF8 / Q02556 / interferon regulatory factor 8ENSG0000014096828
IRF4 / Q15306 / interferon regulatory factor 4ENSG0000013726526
IRF7 / Q92985 / interferon regulatory factor 7ENSG0000018550724
IRF9 / Q00978 / interferon regulatory factor 9ENSG0000021392822
IRF3 / Q14653 / interferon regulatory factor 3ENSG0000012645621
IRF1 / P10914 / interferon regulatory factor 1ENSG0000012534716
IRF2 / P14316 / interferon regulatory factor 2ENSG0000016831016


Protein motifs (from Interpro)
Interpro ID Name
 IPR001346  Interferon regulatory factor DNA-binding domain
 IPR008984  SMAD/FHA domain superfamily
 IPR017855  SMAD-like domain superfamily
 IPR019471  Interferon regulatory factor-3
 IPR019817  Interferon regulatory factor, conserved site
 IPR036388  Winged helix-like DNA-binding domain superfamily
 IPR036390  Winged helix DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007050 cell cycle arrest IDA
 biological_processGO:0008285 negative regulation of cell proliferation IDA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0030216 keratinocyte differentiation IEA
 biological_processGO:0043588 skin development IEA
 biological_processGO:0043616 keratinocyte proliferation IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated ISS
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 biological_processGO:0048468 cell development IEA
 biological_processGO:0060333 interferon-gamma-mediated signaling pathway TAS
 biological_processGO:0060337 type I interferon signaling pathway TAS
 biological_processGO:0060644 mammary gland epithelial cell differentiation ISS
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0030054 cell junction IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IC
 molecular_functionGO:0003677 DNA binding ISS
 molecular_functionGO:0003700 DNA-binding transcription factor activity ISS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0043565 sequence-specific DNA binding IDA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IEA


Pathways (from Reactome)
Pathway description
Interferon gamma signaling
Interferon alpha/beta signaling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000013 Hypoplastic uterus 
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000046 Scrotal hypoplasia 
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 HP:0000048 Bifid scrotum "Separation of the two halves of the scrotum, whereby commonly the 2 halves of the scrotum meet above the penis." [HPO:curators]
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 HP:0000059 Hypoplastic labia majora 
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 HP:0000062 Ambiguous genitalia 
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000193 Bifid uvula "A split or cleft uvula." [HPO:curators]
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 HP:0000196 Lower lip pit "Depression located on the vermilion of the lower lip, usually paramedian." [pmid:19125428]
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 HP:0000204 Cleft lip "A gap in the `upper lip` (FMA:59817). This is a congenital defect resulting from nonfusion of tissues of the lip during embryonal development." [HPO:probinson]
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 HP:0000219 Thin upper lip 
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 HP:0000327 Hypoplasia of the maxilla "Underdevelopment of the `Maxilla` (FMA:9711)." [HPO:probinson]
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000453 Choanal atresia "Absence or abnormal closure of the choana (the posterior nasal aperture)." [HPO:curators]
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 HP:0000668 Hypodontia "Hypodontia describes a situation when there are fewer than the normal number of teeth, whereby 6 teeth or fewer teeth are missing (oligodontia refers to the condition of missing more than 6 teeth and the congenital absence of all teeth is called anodontia)." [HPO:curators]
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 HP:0000677 Oligodontia "The condition of missing over 6 teeth (Missing up to 6 teeth is referred to a hypodontia)." [HPO:curators]
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 HP:0000691 Microdontia 
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 HP:0000726 Dementia 
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 HP:0000772 Abnormality of the ribs 
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 HP:0001171 Ectrodactyly (hands) 
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 HP:0001328 Learning disability 
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 HP:0001387 Joint stiffness "Joint stiffness is a perceived sensation of tightness in a joint or joints when attempting to move them after a period of inactivity. Joint stiffness typically subsides over time." [HPO:curators]
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 HP:0001597 Abnormality of the nails "Abnormality of the fingernails or toenails." [HPO:curators]
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0001770 Toe syndactyly "Webbing or fusion of the toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0002230 Generalized hirsutism "Abnormally increased hair growth over much of the entire body." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0003298 Spina bifida occulta "The closed form of spina bifida." [HPO:curators]
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 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0008288 Nonketotic hyperglycinemia 
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 HP:0008726 Hypoplastic vagina "Underdevelopment of the vagina." [HPO:curators]
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 HP:0009754 Syngnathia "Syngnathia is a congenital adhesion of the maxilla and mandible by fibrous bands." [HPO:curators]
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 HP:0009755 Ankyloblepharon "Adhesion of the ciliary edges of the eyelids to each other." [HPO:curators]
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 HP:0009756 Popliteal pterygium "A pterygium (or pterygia) occuring in the popliteal region (the back of the knee)." [HPO:curators]
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 HP:0009757 Intercrural pterygium "A pterygium (or pterygia) in the intercrural (groin) region." [HPO:curators]
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 HP:0009758 Pyramidal skinfold extending from the base to the top of the nails "Pyramidal skinfold extending from the base to the top of the nails is a rare and distinctive anomaly seen in popliteal pterygia syndrome." [HPO:curators]
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 HP:0010286 Abnormality of the salivary glands "Any abnormality of the salivary glands, the exocrine glands that produce saliva." [HPO:curators]
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 HP:0010554 Cutaneous syndactyly of the fingers "Webbing or fusion of the fingers involving soft parts only." [HPO:curators]
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 HP:0100267 Lip pits 
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 HP:0100335 Non-midline cleft lip 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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