ENSDARG00000101986


Danio rerio

Features
Gene ID: ENSDARG00000101986
  
Biological name :irf6
  
Synonyms : interferon regulatory factor 6 / irf6
  
Possible biological names infered from orthology : O14896 / P97431
  
Species: Danio rerio
  
Chr. number: 22
Strand: 1
Band:
Gene start: 1170294
Gene end: 1182165
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000139404
Ensembl peptide - ENSDARP00000136973
NCBI entrez gene - 393570     See in Manteia.
RefSeq - NM_200598
RefSeq Peptide - NP_956892
swissprot - A0A0R4IQV7
swissprot - Q6PGZ7
ZFIN ID - ZDB-GENE-040426-1137
Ensembl - ENSDARG00000101986
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 IRF6ENSGALG00000001405Gallus gallus
 IRF6ENSG00000117595Homo sapiens
 Irf6ENSMUSG00000026638Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
irf5 / interferon regulatory factor 5 / P56477* / Q13568*ENSDARG0000004568146
irf4a / interferon regulatory factor 4a / IRF4* / Q15306* / Q64287* / interferon regulatory factor 4*ENSDARG0000000656024
irf8 / interferon regulatory factor 8 / P23611* / Q02556*ENSDARG0000005640723
irf10 / interferon regulatory factor 10ENSDARG0000002765822
irf4b / interferon regulatory factor 4b / IRF4* / Q15306* / Q64287* / interferon regulatory factor 4*ENSDARG0000005537422
irf7 / interferon regulatory factor 7 / P70434* / Q92985*ENSDARG0000004566121
irf9 / interferon regulatory factor 9 / Q00978* / Q61179*ENSDARG0000001645719
irf3 / interferon regulatory factor 3 / P70671* / Q14653*ENSDARG0000007625118
irf2a / interferon regulatory factor 2aENSDARG0000000738714
irf1b / interferon regulatory factor 1b / IRF1* / P10914* / interferon regulatory factor 1*ENSDARG0000004324912
irf2 / interferon regulatory factor 2 / P14316* / P23906*ENSDARG0000004046512
irf1a / interferon regulatory factor 1aENSDARG0000004349211


Protein motifs (from Interpro)
Interpro ID Name
 IPR001346  Interferon regulatory factor DNA-binding domain
 IPR008984  SMAD/FHA domain superfamily
 IPR011991  ArsR-like helix-turn-helix domain
 IPR017855  SMAD-like domain superfamily
 IPR019471  Interferon regulatory factor-3
 IPR019817  Interferon regulatory factor, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0048702 embryonic neurocranium morphogenesis IMP
 biological_processGO:0060429 epithelium development IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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