ENSDARG00000045681


Danio rerio

Features
Gene ID: ENSDARG00000045681
  
Biological name :irf5
  
Synonyms : interferon regulatory factor 5 / irf5
  
Possible biological names infered from orthology : P56477 / Q13568
  
Species: Danio rerio
  
Chr. number: 4
Strand: -1
Band:
Gene start: 13605600
Gene end: 13614936
  
Corresponding Affymetrix probe sets: Dr.7758.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000067163
Ensembl peptide - ENSDARP00000135859
Ensembl peptide - ENSDARP00000113423
Ensembl peptide - ENSDARP00000097840
NCBI entrez gene - 405811     See in Manteia.
RefSeq - NM_001327817
RefSeq Peptide - NP_001314746
swissprot - B0S682
swissprot - A0A0R4IKF1
swissprot - B7SEE1
swissprot - Q5RHV2
ZFIN ID - ZDB-GENE-040426-2587
Ensembl - ENSDARG00000045681
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 IRF5ENSGALG00000039982Gallus gallus
 IRF5ENSG00000128604Homo sapiens
 Irf5ENSMUSG00000029771Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
irf6 / interferon regulatory factor 6 / O14896* / P97431*ENSDARG0000010198644
irf8 / interferon regulatory factor 8 / P23611* / Q02556*ENSDARG0000005640723
irf4a / interferon regulatory factor 4a / IRF4* / Q15306* / Q64287* / interferon regulatory factor 4*ENSDARG0000000656022
irf10 / interferon regulatory factor 10ENSDARG0000002765821
irf7 / interferon regulatory factor 7 / P70434* / Q92985*ENSDARG0000004566120
irf9 / interferon regulatory factor 9 / Q00978* / Q61179*ENSDARG0000001645719
irf4b / interferon regulatory factor 4b / IRF4* / Q15306* / Q64287* / interferon regulatory factor 4*ENSDARG0000005537419
irf3 / interferon regulatory factor 3 / P70671* / Q14653*ENSDARG0000007625118
irf2 / interferon regulatory factor 2 / P14316* / P23906*ENSDARG0000004046513
irf2a / interferon regulatory factor 2aENSDARG0000000738712
irf1b / interferon regulatory factor 1b / IRF1* / P10914* / interferon regulatory factor 1*ENSDARG0000004324911
irf1a / interferon regulatory factor 1aENSDARG0000004349211


Protein motifs (from Interpro)
Interpro ID Name
 IPR001346  Interferon regulatory factor DNA-binding domain
 IPR008984  SMAD/FHA domain superfamily
 IPR011991  ArsR-like helix-turn-helix domain
 IPR017855  SMAD-like domain superfamily
 IPR019471  Interferon regulatory factor-3
 IPR019817  Interferon regulatory factor, conserved site
 IPR029838  Interferon regulatory factor 5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0019221 cytokine-mediated signaling pathway IEA
 biological_processGO:0051607 defense response to virus IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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