ENSDARG00000043492


Danio rerio

Features
Gene ID: ENSDARG00000043492
  
Biological name :irf1a
  
Synonyms : interferon regulatory factor 1a / irf1a
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 13
Strand: 1
Band:
Gene start: 311380
Gene end: 318827
  
Corresponding Affymetrix probe sets: Dr.14809.1.A1_at (Zebrafish Array)   NM_001040352_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000070128
NCBI entrez gene - 678604     See in Manteia.
RefSeq - NM_001040352
RefSeq - XM_009307024
RefSeq Peptide - NP_001035442
swissprot - F1QPF2
ZFIN ID - ZDB-GENE-060421-4031
Ensembl - ENSDARG00000043492
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
irf2 / interferon regulatory factor 2 / P14316* / P23906*ENSDARG0000004046536
irf2a / interferon regulatory factor 2aENSDARG0000000738734
irf1b / interferon regulatory factor 1b / IRF1* / P10914* / interferon regulatory factor 1*ENSDARG0000004324931
irf4a / interferon regulatory factor 4a / IRF4* / Q15306* / Q64287* / interferon regulatory factor 4*ENSDARG0000000656025
irf4b / interferon regulatory factor 4b / IRF4* / Q15306* / Q64287* / interferon regulatory factor 4*ENSDARG0000005537424
irf10 / interferon regulatory factor 10ENSDARG0000002765823
irf5 / interferon regulatory factor 5 / P56477* / Q13568*ENSDARG0000004568123
irf6 / interferon regulatory factor 6 / O14896* / P97431*ENSDARG0000010198622
irf8 / interferon regulatory factor 8 / P23611* / Q02556*ENSDARG0000005640722
irf3 / interferon regulatory factor 3 / P70671* / Q14653*ENSDARG0000007625119
irf9 / interferon regulatory factor 9 / Q00978* / Q61179*ENSDARG0000001645719
irf7 / interferon regulatory factor 7 / P70434* / Q92985*ENSDARG0000004566117


Protein motifs (from Interpro)
Interpro ID Name
 IPR001346  Interferon regulatory factor DNA-binding domain
 IPR011991  ArsR-like helix-turn-helix domain
 IPR017431  Interferon regulatory factor-1/2
 IPR019817  Interferon regulatory factor, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0008285 negative regulation of cell proliferation IEA
 biological_processGO:0050776 regulation of immune response IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr