ENSDARG00000027658


Danio rerio

Features
Gene ID: ENSDARG00000027658
  
Biological name :irf10
  
Synonyms : interferon regulatory factor 10 / irf10
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 642001
Gene end: 653333
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000031619
Ensembl peptide - ENSDARP00000146817
Ensembl peptide - ENSDARP00000107166
NCBI entrez gene - 405815     See in Manteia.
RefSeq - NM_212879
RefSeq - XM_005161894
RefSeq Peptide - NP_998044
swissprot - E9QBC1
swissprot - A8E5I1
ZFIN ID - ZDB-GENE-040426-2084
Ensembl - ENSDARG00000027658
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 IRF9ENSGALG00000030291Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
irf4a / interferon regulatory factor 4a / IRF4* / Q15306* / Q64287* / interferon regulatory factor 4*ENSDARG0000000656043
irf4b / interferon regulatory factor 4b / IRF4* / Q15306* / Q64287* / interferon regulatory factor 4*ENSDARG0000005537438
irf8 / interferon regulatory factor 8 / P23611* / Q02556*ENSDARG0000005640735
irf9 / interferon regulatory factor 9 / Q00978* / Q61179*ENSDARG0000001645732
irf5 / interferon regulatory factor 5 / P56477* / Q13568*ENSDARG0000004568128
irf6 / interferon regulatory factor 6 / O14896* / P97431*ENSDARG0000010198628
irf7 / interferon regulatory factor 7 / P70434* / Q92985*ENSDARG0000004566121
irf3 / interferon regulatory factor 3 / P70671* / Q14653*ENSDARG0000007625120
irf2 / interferon regulatory factor 2 / P14316* / P23906*ENSDARG0000004046517
irf2a / interferon regulatory factor 2aENSDARG0000000738716
irf1a / interferon regulatory factor 1aENSDARG0000004349215
irf1b / interferon regulatory factor 1b / IRF1* / P10914* / interferon regulatory factor 1*ENSDARG0000004324915


Protein motifs (from Interpro)
Interpro ID Name
 IPR001346  Interferon regulatory factor DNA-binding domain
 IPR008984  SMAD/FHA domain superfamily
 IPR011991  ArsR-like helix-turn-helix domain
 IPR017855  SMAD-like domain superfamily
 IPR019471  Interferon regulatory factor-3
 IPR019817  Interferon regulatory factor, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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